Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4138

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1443015 to 1447458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1448098 to 1448646 12506 mRNA_4139: 12507 - K14846 RPF1 ribosome production factor 1, at 1448982 to 1450816 12507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,447,212 - 0.1
1,447,217 + 1.0
1,447,478 - 1.4
1,447,570 - -2.6
1,447,770 - 0.3
1,447,788 + -0.9
1,447,947 + 0.0
1,447,950 + 0.7
1,448,046 + -0.3
1,448,060 + 0.2
1,448,060 - -1.1
1,448,215 - 12506 mRNA_4138 0.21 -3.8
1,448,363 + 12506 mRNA_4138 0.48 -2.0
1,448,439 - 12506 mRNA_4138 0.62 -3.2
1,448,524 - 12506 mRNA_4138 0.78 -1.0
1,448,661 - 1.3
1,448,663 - -1.8
1,448,669 - 0.6