Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4124

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4123: 12491 - KOG4510 Permease of the drug/metabolite transporter (DMT) superfamily, at 1402766 to 1404670 12491 mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1405556 to 1407296 12492 mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1407768 to 1409382 12493

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,404,666 - -0.9
1,404,809 + -0.3
1,405,098 + 0.2
1,405,111 - 0.1
1,405,243 + 0.3
1,405,276 + -0.1
1,405,578 - -1.5
1,405,711 - 0.4
1,405,712 + -0.5
1,405,985 + 12492 mRNA_4124 0.25 0.2
1,405,992 - 12492 mRNA_4124 0.25 0.2
1,406,022 - 12492 mRNA_4124 0.27 -0.0
1,406,154 + 12492 mRNA_4124 0.34 -2.5
1,406,155 - 12492 mRNA_4124 0.34 -1.9
1,406,161 + 12492 mRNA_4124 0.35 -0.1
1,406,215 - 12492 mRNA_4124 0.38 0.3
1,406,326 + 12492 mRNA_4124 0.44 0.2
1,406,388 + 12492 mRNA_4124 0.48 -0.7
1,406,804 - 12492 mRNA_4124 0.72 -0.7
1,406,882 - 12492 mRNA_4124 0.76 -0.5
1,407,032 - 12492 mRNA_4124 0.85 -0.2
1,407,151 - 0.5
1,407,180 - -0.2
1,407,308 - 0.2
1,407,454 + -1.7
1,407,456 - 0.8
1,407,467 - -0.5
1,407,474 - 2.0
1,407,474 - 0.1
1,407,475 + -1.0
1,407,475 + -0.5
1,407,477 + -0.5
1,407,477 - 0.7
1,407,479 - 0.2
1,407,490 - -0.5
1,407,490 + -0.7
1,407,492 - -1.6
1,407,493 + -0.6
1,407,495 - -0.2
1,407,504 + -0.2
1,407,512 + 0.1
1,407,530 + -0.0
1,407,532 + 3.0
1,407,681 + -0.3
1,407,817 + -0.0
1,407,950 - 12493 mRNA_4125 0.11 -0.7
1,408,102 + 12493 mRNA_4125 0.21 -0.6
1,408,200 + 12493 mRNA_4125 0.27 -0.6
1,408,251 + 12493 mRNA_4125 0.30 -1.1
1,408,258 - 12493 mRNA_4125 0.30 -0.7