Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4114

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4114: 12482 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 1382865 to 1383586 12482 mRNA_4115: 12483 - BLAST Nuclear receptor corepressor 2 [Rhizoctonia solani], at 1383880 to 1387227 12483

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,381,977 - -0.7
1,382,068 - -0.2
1,382,141 - -3.3
1,382,148 + -0.1
1,382,150 - -0.6
1,382,211 - 0.9
1,382,213 + 1.3
1,382,227 - 0.7
1,382,240 + 1.3
1,382,285 + 0.7
1,382,290 - 0.2
1,382,316 + -0.7
1,382,352 - 0.5
1,382,362 - 0.3
1,382,366 - 0.7
1,382,410 - 0.0
1,382,445 - -0.1
1,382,477 + 1.4
1,382,480 - 0.2
1,382,494 + -0.8
1,382,505 - -0.0
1,382,517 - 0.3
1,382,525 + 0.1
1,382,534 + 0.8
1,382,535 + -0.5
1,382,541 + 0.1
1,382,556 - 2.0
1,382,568 + 0.6
1,382,574 + -0.7
1,382,585 + -0.7
1,382,593 - -0.7
1,382,602 + -1.6
1,382,629 + -1.2
1,382,643 - 0.6
1,382,650 + 2.0
1,382,654 - -0.8
1,382,666 + -0.3
1,382,666 + -0.7
1,382,668 + -0.3
1,382,679 + 0.3
1,382,685 + -0.2
1,382,687 + -1.1
1,382,689 - -0.7
1,382,692 - 1.2
1,382,696 - -1.1
1,382,702 + 0.7
1,382,704 + -1.0
1,382,708 - 0.4
1,382,710 - -0.1
1,382,715 - -0.6
1,382,717 - 1.1
1,382,718 + 0.4
1,382,722 + 0.0
1,382,724 - 0.3
1,382,725 + 0.5
1,382,729 + -0.2
1,382,729 + 0.9
1,382,733 + 2.3
1,382,746 - -0.9
1,382,799 + -1.7
1,382,862 + 1.3
1,382,865 + 0.6
1,382,876 - -0.1
1,382,882 - -0.8
1,382,883 + 0.1
1,382,895 + 0.0
1,383,025 + 12482 mRNA_4114 0.22 -0.7
1,383,026 - 12482 mRNA_4114 0.22 -1.5
1,383,030 - 12482 mRNA_4114 0.23 -1.3
1,383,040 + 12482 mRNA_4114 0.24 -0.6
1,383,040 - 12482 mRNA_4114 0.24 -0.2
1,383,041 + 12482 mRNA_4114 0.24 -0.9
1,383,043 + 12482 mRNA_4114 0.25 -0.7
1,383,048 + 12482 mRNA_4114 0.25 0.7
1,383,058 + 12482 mRNA_4114 0.27 -1.2
1,383,176 + 12482 mRNA_4114 0.43 -0.2
1,383,187 + 12482 mRNA_4114 0.45 0.1
1,383,305 - 12482 mRNA_4114 0.61 -0.6
1,383,332 + 12482 mRNA_4114 0.65 -0.3
1,383,342 - 12482 mRNA_4114 0.66 0.3
1,383,381 - 12482 mRNA_4114 0.71 0.1
1,383,457 - 12482 mRNA_4114 0.82 -0.3
1,383,460 - 12482 mRNA_4114 0.82 -0.3
1,383,461 + 12482 mRNA_4114 0.83 -0.5
1,383,508 + 12482 mRNA_4114 0.89 -1.1
1,383,598 - -0.5
1,383,599 + -1.3
1,383,606 + -2.0
1,383,615 - 0.4
1,383,668 + -1.9
1,383,756 - 0.0
1,383,761 + 0.1
1,383,770 + -0.6
1,383,796 - 0.2
1,383,863 - 0.1
1,383,924 - -0.0
1,383,926 - 0.6
1,383,928 + 0.6
1,383,930 + -0.9
1,383,936 + 0.5
1,383,940 - -0.4
1,384,044 + -0.8
1,384,092 + 0.0
1,384,092 - 0.2
1,384,106 - 1.1
1,384,107 - -0.1
1,384,120 - 0.9
1,384,375 + 12483 mRNA_4115 0.15 -0.2
1,384,546 + 12483 mRNA_4115 0.20 1.4