Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4111

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1375596 to 1376142 12478 mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1376562 to 1377671 12479 mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1378043 to 1379698 12480

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,376,002 - 12478 mRNA_4110 0.74 0.2
1,376,145 - -1.3
1,376,335 - -1.6
1,376,468 + 1.4
1,376,469 + -0.5
1,376,472 + -0.7
1,376,477 + 1.6
1,376,485 - -0.1
1,376,490 - 0.1
1,376,493 - 0.6
1,376,499 - -0.4
1,376,499 + 0.1
1,376,509 - 0.3
1,376,795 - 12479 mRNA_4111 0.21 0.6
1,376,810 - 12479 mRNA_4111 0.22 0.6
1,377,057 - 12479 mRNA_4111 0.45 0.7
1,377,228 - 12479 mRNA_4111 0.60 1.6
1,377,528 + 12479 mRNA_4111 0.87 0.1
1,377,679 + -3.2
1,377,799 + 0.6
1,377,814 - 0.8
1,377,816 + 0.3
1,377,816 + -0.7
1,377,817 + -0.6
1,377,822 - 1.5
1,377,825 + -0.5
1,377,834 - -0.1
1,377,839 + 0.7
1,377,843 - -0.9
1,377,859 + -0.5
1,377,981 - 0.2
1,377,994 + -1.0
1,378,023 + 1.9
1,378,118 + 0.7
1,378,288 + 12480 mRNA_4112 0.15 -1.3
1,378,288 + 12480 mRNA_4112 0.15 -0.0
1,378,310 - 12480 mRNA_4112 0.16 -1.2
1,378,447 + 12480 mRNA_4112 0.24 0.6
1,378,544 - 12480 mRNA_4112 0.30 -1.0
1,378,581 - 12480 mRNA_4112 0.32 1.1
1,378,598 + 12480 mRNA_4112 0.34 -0.5
1,378,601 + 12480 mRNA_4112 0.34 -1.1