Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4047

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4047: 12415 - Hypothetical Protein, at 1233191 to 1233964 12415 mRNA_4048: 12416 - Hypothetical Protein, at 1234183 to 1234746 12416

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,232,260 - -0.1
1,232,325 + -1.3
1,232,862 - 0.6
1,232,876 + -0.1
1,233,006 - -0.6
1,233,010 - 0.1
1,233,018 + 0.3
1,233,022 + -0.0
1,233,024 - 0.0
1,233,026 - 0.4
1,233,028 - 0.2
1,233,031 + -2.2
1,233,032 + 0.2
1,233,048 + 0.6
1,233,180 - -0.2
1,233,203 + -0.8
1,233,331 - 12415 mRNA_4047 0.18 -0.4
1,233,332 - 12415 mRNA_4047 0.18 -1.4
1,233,619 - 12415 mRNA_4047 0.55 1.1
1,233,671 - 12415 mRNA_4047 0.62 1.9
1,233,730 + 12415 mRNA_4047 0.70 1.0
1,233,750 - 12415 mRNA_4047 0.72 2.1
1,233,823 - 12415 mRNA_4047 0.82 1.0
1,233,979 + -0.5
1,234,040 - -0.6
1,234,099 + -0.9
1,234,101 - -0.3
1,234,103 + 0.3
1,234,113 - -0.1
1,234,116 + -0.1
1,234,130 + 0.9
1,234,145 - -1.3
1,234,163 - 1.0
1,234,171 - -0.0
1,234,176 + -0.3
1,234,190 + -0.8
1,234,193 - -1.1
1,234,224 + 1.4
1,234,269 + 12416 mRNA_4048 0.15 0.6
1,234,340 - 12416 mRNA_4048 0.28 0.1
1,234,381 - 12416 mRNA_4048 0.35 0.0
1,234,415 + 12416 mRNA_4048 0.41 1.7
1,234,422 + 12416 mRNA_4048 0.42 0.4
1,234,431 - 12416 mRNA_4048 0.44 -0.4
1,234,448 - 12416 mRNA_4048 0.47 0.8
1,234,452 - 12416 mRNA_4048 0.48 0.6
1,234,456 - 12416 mRNA_4048 0.48 -0.7
1,234,457 + 12416 mRNA_4048 0.49 -0.1
1,234,463 - 12416 mRNA_4048 0.50 0.0
1,234,534 - 12416 mRNA_4048 0.62 0.1
1,234,538 - 12416 mRNA_4048 0.63 0.3
1,234,555 + 12416 mRNA_4048 0.66 1.4
1,234,561 - 12416 mRNA_4048 0.67 0.1
1,234,564 + 12416 mRNA_4048 0.68 0.4
1,234,583 + 12416 mRNA_4048 0.71 -0.4
1,234,634 - 12416 mRNA_4048 0.80 0.7
1,234,702 + -0.2
1,234,790 - 2.0
1,234,791 + 1.1
1,234,792 + 1.4
1,234,793 + 1.3
1,234,878 - 1.4
1,234,928 + -1.0