Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4020

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4019: 12387 - K15116 SLC25A33_36, RIM2 solute carrier family 25, member 33/36, at 1173256 to 1174830 12387 mRNA_4020: 12388 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1175371 to 1177863 12388 mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1178215 to 1180562 12389

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,174,984 + 0.0
1,175,128 + -0.9
1,175,225 - -1.4
1,175,233 + 0.5
1,175,234 + 0.5
1,175,271 - 0.0
1,175,278 + -0.9
1,175,278 - -0.2
1,175,279 + 0.4
1,175,284 + 0.9
1,175,290 + 0.2
1,175,293 - -0.2
1,175,301 + -0.4
1,175,303 - -0.1
1,175,303 - 0.5
1,175,313 + -0.2
1,175,316 + 0.8
1,175,413 - -0.3
1,175,414 - -1.8
1,175,427 - -0.3
1,175,429 - -0.9
1,175,436 - -0.3
1,175,442 - 0.6
1,175,443 + -1.1
1,175,453 + -1.0
1,175,457 - -0.8
1,175,479 + -0.2
1,175,564 + -1.1
1,175,602 + -0.8
1,175,608 - -1.3
1,175,609 + -0.4
1,175,612 + -1.0
1,175,615 + -0.6
1,175,621 + 12388 mRNA_4020 0.10 -0.6
1,175,658 - 12388 mRNA_4020 0.12 -0.3
1,175,667 + 12388 mRNA_4020 0.12 1.6
1,175,671 - 12388 mRNA_4020 0.12 -2.8
1,175,772 + 12388 mRNA_4020 0.16 -0.0
1,175,857 + 12388 mRNA_4020 0.19 0.7
1,175,949 + 12388 mRNA_4020 0.23 -2.4
1,176,208 - 12388 mRNA_4020 0.34 -0.6
1,176,208 - 12388 mRNA_4020 0.34 -0.0
1,176,377 - 12388 mRNA_4020 0.40 -1.1
1,176,956 + 12388 mRNA_4020 0.64 1.2
1,177,069 + 12388 mRNA_4020 0.68 -0.6
1,177,672 - -0.5
1,177,680 + -0.3
1,177,835 - 1.4
1,177,951 + 0.2
1,178,042 + -0.4
1,178,083 + 0.3
1,178,110 + -0.5
1,178,112 + 1.5
1,178,115 - -0.1
1,178,119 - 0.1
1,178,126 + 0.7
1,178,138 + 0.1
1,178,260 - -1.4
1,178,291 + -1.1
1,178,441 + -1.5
1,178,454 + 12389 mRNA_4021 0.10 0.0
1,178,462 - 12389 mRNA_4021 0.11 -1.0