Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3967

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1016759 to 1018391 12334 mRNA_3967: 12335 - KOG1972 Uncharacterized conserved protein, at 1018867 to 1022845 12335 mRNA_3968: 12336 - HMMPfam-Thaumatin family-PF00314,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 1022985 to 1024769 12336

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,018,005 + 12334 mRNA_3966 0.76 0.3
1,018,111 + 12334 mRNA_3966 0.83 0.6
1,018,111 + 12334 mRNA_3966 0.83 0.6
1,018,128 - 12334 mRNA_3966 0.84 0.7
1,018,281 - 0.4
1,018,283 - -0.2
1,018,406 - 0.1
1,018,421 + -0.1
1,018,434 + -0.1
1,018,443 + 0.1
1,018,451 + -0.9
1,018,563 + -0.1
1,018,575 + -1.4
1,018,724 + 1.8
1,018,727 + -0.6
1,019,129 + -1.2
1,019,754 - 12335 mRNA_3967 0.22 -1.7
1,019,759 + 12335 mRNA_3967 0.22 -0.4
1,019,902 - 12335 mRNA_3967 0.26 0.1
1,020,358 + 12335 mRNA_3967 0.37 -1.6
1,020,512 - 12335 mRNA_3967 0.41 -0.9
1,021,190 - 12335 mRNA_3967 0.58 -0.3
1,021,208 - 12335 mRNA_3967 0.59 -0.1
1,021,211 + 12335 mRNA_3967 0.59 0.5
1,021,269 - 12335 mRNA_3967 0.60 -0.0
1,021,284 + 12335 mRNA_3967 0.61 -1.4
1,021,434 + 12335 mRNA_3967 0.65 1.2
1,021,493 + 12335 mRNA_3967 0.66 -0.8
1,021,762 - 12335 mRNA_3967 0.73 -2.8
1,022,053 - 12335 mRNA_3967 0.80 -1.2
1,022,129 + 12335 mRNA_3967 0.82 -1.1
1,022,743 - -0.5
1,022,754 + -0.4
1,023,011 + 0.6
1,023,610 + 12336 mRNA_3968 0.35 -1.4
1,023,627 + 12336 mRNA_3968 0.36 0.5