Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3937

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3936: 12304 - Hypothetical Protein, at 945661 to 946219 12304 mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946371 to 947832 12305 mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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945,403 - -1.1
945,404 - -0.1
945,404 - -0.8
945,542 - -1.6
945,546 - -2.3
945,548 + -0.9
945,549 + 1.0
945,562 + 0.1
945,880 + 12304 mRNA_3936 0.39 0.2
946,093 - 12304 mRNA_3936 0.77 -1.3
946,250 - 0.4
947,268 + 12305 mRNA_3937 0.61 -0.5
947,294 + 12305 mRNA_3937 0.63 2.2
947,433 - 12305 mRNA_3937 0.73 -0.5
947,436 + 12305 mRNA_3937 0.73 0.1
947,560 - 12305 mRNA_3937 0.81 0.9
947,592 - 12305 mRNA_3937 0.84 0.1
947,596 + 12305 mRNA_3937 0.84 0.2
947,714 - -0.6
947,721 + 0.1
947,738 - -0.6
947,780 - 0.7
947,886 + 0.3
948,032 - -0.1
948,309 + 12306 mRNA_3938 0.18 -0.4
948,459 - 12306 mRNA_3938 0.27 0.4
948,590 + 12306 mRNA_3938 0.35 0.8
948,766 + 12306 mRNA_3938 0.45 -0.4
948,806 + 12306 mRNA_3938 0.48 -0.4