Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3858

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754082 to 757282 12225 mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757885 to 761783 12226 mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762082 to 763041 12227

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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756,935 - 12225 mRNA_3857 0.89 0.5
757,046 + -0.6
757,414 + -2.7
757,514 - -0.2
757,514 + 0.4
757,681 + -0.1
757,945 - 0.1
757,947 - 0.1
758,100 + 0.7
758,250 - -0.5
758,293 + 12226 mRNA_3858 0.10 0.1
758,873 - 12226 mRNA_3858 0.25 -0.6
758,885 + 12226 mRNA_3858 0.26 -0.1
758,993 - 12226 mRNA_3858 0.28 -1.3
758,994 + 12226 mRNA_3858 0.28 1.0
759,151 + 12226 mRNA_3858 0.32 -0.3
759,173 - 12226 mRNA_3858 0.33 -0.3
759,307 + 12226 mRNA_3858 0.36 -0.7
759,844 + 12226 mRNA_3858 0.50 0.2
759,881 + 12226 mRNA_3858 0.51 1.0
759,896 + 12226 mRNA_3858 0.52 -1.0
759,915 + 12226 mRNA_3858 0.52 -1.1
760,012 + 12226 mRNA_3858 0.55 0.7
761,221 + 12226 mRNA_3858 0.86 -0.2
761,481 - -0.6
761,511 - -0.5
761,590 - 0.3
761,650 + -0.3
761,838 + 1.1
762,365 - 12227 mRNA_3859 0.29 2.6
762,366 + 12227 mRNA_3859 0.30 1.4
762,379 + 12227 mRNA_3859 0.31 0.7
762,413 - 12227 mRNA_3859 0.34 -0.7
762,552 + 12227 mRNA_3859 0.49 0.3
762,570 + 12227 mRNA_3859 0.51 -0.1
762,669 - 12227 mRNA_3859 0.61 -0.4