Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3838

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704391 to 706480 12205 mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706826 to 713191 12206 mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713356 to 714077 12207

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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705,896 - 12205 mRNA_3837 0.72 0.7
706,398 + -2.1
706,494 - 1.4
707,153 - -0.7
707,819 - 12206 mRNA_3838 0.16 -0.2
708,040 - 12206 mRNA_3838 0.19 -0.6
708,140 - 12206 mRNA_3838 0.21 -0.1
709,031 + 12206 mRNA_3838 0.35 0.4
709,236 + 12206 mRNA_3838 0.38 -0.2
709,332 - 12206 mRNA_3838 0.39 0.5
709,484 - 12206 mRNA_3838 0.42 -0.9
709,651 - 12206 mRNA_3838 0.44 -2.4
710,645 - 12206 mRNA_3838 0.60 -1.0
710,652 + 12206 mRNA_3838 0.60 -0.6
710,809 - 12206 mRNA_3838 0.63 0.5
710,875 + 12206 mRNA_3838 0.64 -2.8
710,932 - 12206 mRNA_3838 0.64 0.2
711,681 + 12206 mRNA_3838 0.76 0.7
711,688 + 12206 mRNA_3838 0.76 0.0
712,144 + 12206 mRNA_3838 0.84 0.5
712,423 - 12206 mRNA_3838 0.88 -0.2
712,660 + 0.7
712,686 - -2.2
712,990 + -0.6
713,000 - -0.9
713,141 - -1.4
713,311 + -0.9
713,424 - 0.1
713,568 + 12207 mRNA_3839 0.29 0.1
713,577 - 12207 mRNA_3839 0.31 0.3
714,021 + -0.8
714,033 + 1.3
714,091 - -1.5