Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3778

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145 mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558485 to 559797 12146 mRNA_3779: 12147 - HMMPfam-Spc19-PF08287, at 560572 to 561347 12147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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557,564 + 12145 mRNA_3777 0.45 0.9
557,597 + 12145 mRNA_3777 0.49 0.3
558,032 - 2.6
558,305 + -0.2
558,306 - 1.1
558,335 + 0.1
558,442 - 0.6
558,459 + -1.0
558,607 - 0.6
558,917 + 12146 mRNA_3778 0.33 -1.4
559,061 - 12146 mRNA_3778 0.44 -1.0
559,121 - 12146 mRNA_3778 0.48 -0.1
559,355 - 12146 mRNA_3778 0.66 0.1
559,667 + 0.5
559,785 + -0.8
559,788 - -1.2
559,788 - 1.4
559,798 + -0.4
559,811 - 0.2
559,824 + -0.7
560,038 - -0.1
560,064 + 1.1
560,074 + -1.8
560,361 + -0.6
560,380 - 0.1
560,386 + 1.9
560,388 + -0.1
560,394 - 0.1
560,399 - -0.5
560,540 - 1.0