Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3739

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466684 to 467899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468433 to 469585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469899 to 470347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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467,764 - 12106 mRNA_3738 0.89 0.3
467,987 + -2.3
468,112 - 0.2
468,122 + 0.1
468,255 + 0.8
468,416 - 1.5
468,428 - -2.1
468,507 - 0.4
468,532 + 0.5
468,535 - 0.8
468,539 - 1.4
468,694 + 12107 mRNA_3739 0.23 1.1
469,126 + 12107 mRNA_3739 0.60 0.8
469,139 + 12107 mRNA_3739 0.61 0.8
469,269 - 12107 mRNA_3739 0.73 -0.4
469,290 + 12107 mRNA_3739 0.74 0.8
469,543 + -0.3
469,589 - 0.1
469,597 + -2.2
469,652 + -0.1
469,722 + -0.7
469,724 - 1.5
469,742 + 0.0
469,742 + -0.5
469,742 + -0.1
469,753 + 0.6
469,823 + 0.2
469,825 + -0.4
469,849 - -0.2
469,877 + -0.4
469,878 + -0.5
469,881 - 0.9
469,881 - 1.5
469,892 + -1.1
469,895 + -0.3
469,897 + -0.4
469,939 + -1.9
469,962 - 12108 mRNA_3740 0.14 -0.8
469,963 - 12108 mRNA_3740 0.14 0.4
469,963 - 12108 mRNA_3740 0.14 0.4
469,965 + 12108 mRNA_3740 0.15 0.0
469,965 - 12108 mRNA_3740 0.15 0.2
469,967 - 12108 mRNA_3740 0.15 1.1
469,968 + 12108 mRNA_3740 0.15 -2.7
469,968 - 12108 mRNA_3740 0.15 0.3
469,970 + 12108 mRNA_3740 0.16 0.6
469,984 - 12108 mRNA_3740 0.19 0.7
469,998 + 12108 mRNA_3740 0.22 0.6
470,000 + 12108 mRNA_3740 0.22 -0.3
470,002 - 12108 mRNA_3740 0.23 0.2
470,002 - 12108 mRNA_3740 0.23 0.4
470,018 - 12108 mRNA_3740 0.27 2.0
470,041 + 12108 mRNA_3740 0.32 0.1
470,052 - 12108 mRNA_3740 0.34 0.2
470,064 - 12108 mRNA_3740 0.37 0.8
470,121 + 12108 mRNA_3740 0.49 -0.1
470,192 + 12108 mRNA_3740 0.65 -2.1
470,250 + 12108 mRNA_3740 0.78 0.4
470,259 + 12108 mRNA_3740 0.80 0.5
470,291 + 12108 mRNA_3740 0.87 -0.4
470,325 + -0.6
470,430 - -1.7
470,478 - -0.0