Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3652

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019 mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260397 to 263923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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258,563 + 12019 mRNA_3651 0.46 -0.6
258,579 - 12019 mRNA_3651 0.49 0.7
258,584 - 12019 mRNA_3651 0.50 -1.4
258,588 + 12019 mRNA_3651 0.51 0.1
258,589 + 12019 mRNA_3651 0.51 0.5
258,590 + 12019 mRNA_3651 0.51 -0.8
258,876 + 0.0
258,882 - -0.1
258,982 - -0.6
259,004 - -0.3
259,010 - -0.0
259,011 + 0.6
259,110 - -0.0
259,149 - 0.1
259,306 + -0.2
259,431 - -0.1
259,459 + -0.3
259,576 - 12020 mRNA_3652 0.14 0.4
259,600 + 12020 mRNA_3652 0.17 2.2
259,727 + 12020 mRNA_3652 0.33 -0.8
259,736 - 12020 mRNA_3652 0.34 -2.5
259,766 + 12020 mRNA_3652 0.38 -0.0
259,915 + 12020 mRNA_3652 0.56 -0.3
260,019 + 12020 mRNA_3652 0.69 1.3
260,029 + 12020 mRNA_3652 0.70 -0.5
260,045 + 12020 mRNA_3652 0.72 1.0
260,322 - 2.1
260,324 + 3.1
260,329 - -0.4
260,330 + -0.1
260,335 + 0.8
260,336 + 0.2
260,340 + -0.8
260,458 - 0.0
260,490 + -0.7
260,498 + 1.4
260,517 + -0.2
260,620 - -0.6
260,620 - -0.4
260,659 + -1.3
260,772 + 12021 mRNA_3653 0.11 2.2
260,779 + 12021 mRNA_3653 0.11 1.2
260,781 + 12021 mRNA_3653 0.11 -0.0
260,787 + 12021 mRNA_3653 0.11 1.1
260,792 + 12021 mRNA_3653 0.11 -1.2
260,816 + 12021 mRNA_3653 0.12 -0.3
260,928 - 12021 mRNA_3653 0.15 -0.1
260,947 + 12021 mRNA_3653 0.16 2.6
261,105 + 12021 mRNA_3653 0.20 1.2