Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3627

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652 11994 mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199548 to 202220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202614 to 203898 11996

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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199,044 + 0.7
199,200 - -0.4
199,204 + -1.2
199,342 + -0.4
199,511 + 1.4
199,512 + -0.1
199,783 - 0.7
199,804 + -0.6
200,002 + 11995 mRNA_3627 0.17 -0.5
200,655 + 11995 mRNA_3627 0.41 -0.7
200,869 + 11995 mRNA_3627 0.49 -0.1
200,948 - 11995 mRNA_3627 0.52 1.1
200,960 + 11995 mRNA_3627 0.53 -1.7
201,502 - 11995 mRNA_3627 0.73 0.6
201,792 - 11995 mRNA_3627 0.84 0.1
201,941 - 11995 mRNA_3627 0.90 -0.9
201,976 - -1.9
201,976 + -2.2
202,114 - 2.1
202,243 + -0.2
202,370 + 0.5
202,374 + 0.0
202,391 - 1.1
202,395 + 1.1
202,401 + -0.2
202,409 - -0.6
202,529 - -0.1
202,539 + 0.9
202,545 - -0.7
202,548 - 0.9
202,555 - -0.1
202,557 + -0.2
202,564 - -0.2
202,613 - 0.7
202,685 - 0.4
202,687 - 0.4
202,701 + 0.3
202,747 - 11996 mRNA_3628 0.10 1.2
202,786 + 11996 mRNA_3628 0.13 -0.4
202,855 + 11996 mRNA_3628 0.19 0.9
202,967 + 11996 mRNA_3628 0.27 -0.2
202,998 + 11996 mRNA_3628 0.30 0.1
203,138 - 11996 mRNA_3628 0.41 0.6
203,147 - 11996 mRNA_3628 0.41 1.0