Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3566

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70046 to 70788 11935

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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67,345 - 11933 mRNA_3565 0.84 -1.0
67,730 + -1.2
67,893 - -0.0
67,913 + -0.3
67,917 - -1.2
68,040 - -0.1
68,047 + 0.2
68,052 - 2.0
68,063 - 0.7
68,072 + -0.1
68,075 + -1.7
68,165 - -0.8
68,174 + -0.1
68,174 - -0.5
68,209 + -0.3
68,209 - -1.9
68,214 - 0.9
68,217 + 0.2
68,226 - -0.7
68,226 + -0.1
68,227 + 0.6
68,238 - -0.2
68,239 - 0.5
68,246 + 0.6
68,259 + 0.2
68,289 - 1.2
68,314 + -0.1
68,356 - -0.7
68,390 + -2.2
68,392 - 0.1
68,395 - 0.6
68,500 + 11934 mRNA_3566 0.15 -0.1
68,647 + 11934 mRNA_3566 0.28 1.0
68,665 + 11934 mRNA_3566 0.29 0.1
68,939 - 11934 mRNA_3566 0.53 -0.0
69,236 + 11934 mRNA_3566 0.79 1.5
69,406 - 0.2
69,416 + -0.4
69,522 - 1.1
69,532 + -0.1
69,728 + -2.0
69,827 - 1.7