Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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37,505 + -1.1
37,550 - -0.9
37,558 - 0.3
37,568 - 0.7
37,569 + 2.0
37,571 + 0.3
37,609 + 0.8
37,610 - -0.0
37,630 - 11923 mRNA_3555 0.12 0.2
37,630 + 11923 mRNA_3555 0.12 0.7
37,632 + 11923 mRNA_3555 0.12 1.0
37,636 + 11923 mRNA_3555 0.13 1.7
37,646 + 11923 mRNA_3555 0.14 0.3
37,650 - 11923 mRNA_3555 0.15 -0.3
37,684 - 11923 mRNA_3555 0.19 0.4
37,746 + 11923 mRNA_3555 0.27 0.0
37,753 + 11923 mRNA_3555 0.28 -0.1
37,760 + 11923 mRNA_3555 0.29 1.4
37,763 + 11923 mRNA_3555 0.29 -0.3
37,812 - 11923 mRNA_3555 0.36 -0.6
37,822 - 11923 mRNA_3555 0.37 -0.4
37,833 + 11923 mRNA_3555 0.38 -0.6
37,833 - 11923 mRNA_3555 0.38 0.4
37,835 + 11923 mRNA_3555 0.38 -1.6
37,844 - 11923 mRNA_3555 0.40 1.8
37,848 - 11923 mRNA_3555 0.40 -1.4
37,861 + 11923 mRNA_3555 0.42 -0.1
37,865 - 11923 mRNA_3555 0.42 -1.1
37,867 + 11923 mRNA_3555 0.43 0.2
37,870 + 11923 mRNA_3555 0.43 2.2
37,871 + 11923 mRNA_3555 0.43 0.7
37,877 + 11923 mRNA_3555 0.44 -0.4
37,885 - 11923 mRNA_3555 0.45 -0.4
37,920 + 11923 mRNA_3555 0.49 -0.9
37,920 + 11923 mRNA_3555 0.49 -0.9
37,924 + 11923 mRNA_3555 0.50 -1.2
37,931 + 11923 mRNA_3555 0.51 -0.4
37,979 + 11923 mRNA_3555 0.57 0.3
37,984 + 11923 mRNA_3555 0.58 0.3
37,994 + 11923 mRNA_3555 0.59 0.6
38,032 + 11923 mRNA_3555 0.64 0.5
38,081 - 11923 mRNA_3555 0.70 0.6
38,081 - 11923 mRNA_3555 0.70 0.9
38,084 - 11923 mRNA_3555 0.71 -0.2
38,086 + 11923 mRNA_3555 0.71 0.4
38,090 + 11923 mRNA_3555 0.71 0.3
38,115 + 11923 mRNA_3555 0.75 0.4
38,128 + 11923 mRNA_3555 0.76 -1.1
38,163 - 11923 mRNA_3555 0.81 -1.4
38,183 + 11923 mRNA_3555 0.83 -0.5
38,193 + 11923 mRNA_3555 0.85 -0.5
38,234 + 11923 mRNA_3555 0.90 3.5
38,253 - 1.0
38,254 - -0.3
38,256 - 0.2
38,257 + 0.9
38,258 - 0.1
38,258 - -0.5
38,269 + -0.3
38,272 + -2.2
38,275 + -0.1
38,285 + -0.7
38,411 + -0.1
38,421 - -0.3
38,431 - 0.0
38,476 + 0.4
38,548 + 0.9
38,580 + -0.9
38,612 + -0.6
38,706 - 11924 mRNA_3556 0.11 -0.7
38,767 + 11924 mRNA_3556 0.14 0.1
38,904 + 11924 mRNA_3556 0.19 -1.9
39,199 - 11924 mRNA_3556 0.32 -0.2
39,206 + 11924 mRNA_3556 0.32 -0.8
39,447 - 11924 mRNA_3556 0.42 -1.0
39,471 - 11924 mRNA_3556 0.43 -2.1
39,481 + 11924 mRNA_3556 0.44 -1.2
39,517 + 11924 mRNA_3556 0.45 -0.7
39,760 + 11924 mRNA_3556 0.55 -0.2
39,781 - 11924 mRNA_3556 0.56 -1.5
39,865 - 11924 mRNA_3556 0.60 0.2
40,205 - 11924 mRNA_3556 0.74 1.1
40,298 + 11924 mRNA_3556 0.78 -0.1
40,353 + 11924 mRNA_3556 0.80 -1.3
40,357 + 11924 mRNA_3556 0.81 -1.4
40,402 - 11924 mRNA_3556 0.82 -1.2
40,937 + 0.4
40,974 + 0.9
41,079 - 0.7
41,080 - -0.6
41,082 - -0.4
41,084 + -0.9
41,224 + -0.5
41,226 - -0.5
41,227 + 2.4
41,234 + 0.9
41,242 + -0.9
41,261 - 0.7
41,369 - -0.6
41,371 - -0.2
41,391 - -0.3
41,396 + 0.1
41,405 + -0.8
41,564 - 0.1
41,678 - 1.1
41,692 - 11925 mRNA_3557 0.10 0.2
41,692 + 11925 mRNA_3557 0.10 -0.0