Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3397

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577569 to 578953 11764 mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457 11765 mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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578,282 + 11764 mRNA_3396 0.51 -0.1
578,323 - 11764 mRNA_3396 0.54 -0.8
578,414 + 11764 mRNA_3396 0.61 1.0
578,724 + 11764 mRNA_3396 0.83 0.1
578,845 - 0.0
578,848 + -1.7
578,877 + 2.5
579,131 + -0.3
579,137 - 0.7
579,148 - 1.2
579,181 + 0.1
579,214 + -0.5
579,239 + 1.7
579,311 - 1.4
579,442 - 11765 mRNA_3397 0.14 -1.8
579,446 + 11765 mRNA_3397 0.14 -0.6
579,639 + 11765 mRNA_3397 0.31 0.6
579,655 - 11765 mRNA_3397 0.32 -0.6
579,739 - 11765 mRNA_3397 0.39 -0.2
579,748 + 11765 mRNA_3397 0.40 -0.1
579,776 - 11765 mRNA_3397 0.42 2.1
579,878 - 11765 mRNA_3397 0.51 -0.7
579,923 - 11765 mRNA_3397 0.55 -1.1
579,923 + 11765 mRNA_3397 0.55 0.7
579,924 - 11765 mRNA_3397 0.55 1.5
579,980 + 11765 mRNA_3397 0.59 0.5
580,068 + 11765 mRNA_3397 0.67 1.6
580,071 - 11765 mRNA_3397 0.67 0.2
580,212 - 11765 mRNA_3397 0.79 0.9
580,227 - 11765 mRNA_3397 0.80 -1.0
580,388 - 1.8
580,725 + 0.5
581,125 + 11766 mRNA_3398 0.28 -1.3
581,187 - 11766 mRNA_3398 0.34 0.2
581,252 + 11766 mRNA_3398 0.41 0.8
581,276 - 11766 mRNA_3398 0.43 0.5
581,276 - 11766 mRNA_3398 0.43 0.2
581,289 + 11766 mRNA_3398 0.44 1.2
581,312 + 11766 mRNA_3398 0.47 -0.6
581,400 + 11766 mRNA_3398 0.56 0.5
581,407 + 11766 mRNA_3398 0.57 -0.2
581,422 + 11766 mRNA_3398 0.58 0.6
581,435 - 11766 mRNA_3398 0.59 -1.2