Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3385

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554455 to 555770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556119 to 557419 11754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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553,560 + 0.5
554,046 + 0.4
554,060 + -0.3
554,186 + -0.6
554,333 + -0.8
554,339 - -0.8
554,345 - 0.5
554,345 + -0.1
554,346 + 0.6
554,347 + -0.3
554,351 - -0.3
554,361 + -0.3
554,362 + 0.8
554,369 - -0.4
554,389 - 1.2
554,390 + -0.8
554,400 - 0.9
554,632 - 11753 mRNA_3385 0.13 -0.1
554,644 + 11753 mRNA_3385 0.14 0.3
554,673 - 11753 mRNA_3385 0.17 0.4
554,789 - 11753 mRNA_3385 0.25 -0.8
554,793 - 11753 mRNA_3385 0.26 -1.0
554,938 + 11753 mRNA_3385 0.37 1.0
554,941 - 11753 mRNA_3385 0.37 1.0
555,086 + 11753 mRNA_3385 0.48 -1.6
555,302 - 11753 mRNA_3385 0.64 0.4
555,385 + 11753 mRNA_3385 0.71 0.5
555,632 + 11753 mRNA_3385 0.89 1.3
555,812 + 1.3
555,813 - -0.1
555,958 - 2.0
555,965 + 1.1
555,967 + 0.6
555,975 + 0.5
555,976 - 0.5
555,989 + 0.4
556,011 - -0.5