Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3317

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684 mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685 mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383705 to 386213 11686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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380,581 + 11684 mRNA_3316 0.64 -1.3
380,669 - 11684 mRNA_3316 0.69 -1.1
380,839 + 11684 mRNA_3316 0.80 -0.0
380,840 - 11684 mRNA_3316 0.80 1.7
380,871 - 11684 mRNA_3316 0.82 0.8
381,127 - -0.5
381,403 + 0.0
381,760 + 11685 mRNA_3317 0.25 0.1
381,860 + 11685 mRNA_3317 0.33 -0.2
381,872 + 11685 mRNA_3317 0.33 -0.0
382,024 - 11685 mRNA_3317 0.45 1.4
382,024 + 11685 mRNA_3317 0.45 0.1
382,279 + 11685 mRNA_3317 0.63 -0.4
382,282 - 11685 mRNA_3317 0.63 0.4
382,609 + 11685 mRNA_3317 0.87 -0.9
382,739 - -0.1
383,029 + -0.8
383,161 - -1.0
383,190 + -0.1
383,311 - 0.7
383,460 - -0.5
383,467 + 2.5
383,471 - 0.5
383,471 + -0.3
383,476 - -0.1
383,483 + -0.1
383,484 - -1.2
383,487 - -0.3
383,490 + 1.6
383,498 + -0.2
383,510 - 1.7
383,522 + 1.1
383,574 + 1.4
383,672 + 0.9
383,679 + -0.0
383,688 - 0.5
383,701 - -1.7
383,743 + 0.4
383,778 + 1.5