Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3281

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3280: 11648 - Hypothetical Protein, at 281870 to 282355 11648 mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282571 to 284691 11649 mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285167 to 286436 11650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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281,575 - -1.9
281,671 - -0.1
281,689 - -0.5
281,690 - -1.2
281,690 - -0.5
281,692 - -1.0
281,692 - -0.1
281,692 - -1.8
281,696 - 3.0
281,696 - 0.9
281,701 + -0.1
281,712 - 0.2
281,713 - 0.3
281,713 - -1.1
281,716 + -2.2
281,718 - -1.1
281,719 - -1.8
281,719 + 1.3
281,720 + 0.1
281,729 + 2.3
281,771 + 0.3
281,876 - 1.3
281,885 - -0.2
281,886 + -0.2
281,995 - 11648 mRNA_3280 0.26 0.6
282,289 - 11648 mRNA_3280 0.86 0.1
282,292 + 11648 mRNA_3280 0.87 0.2
282,300 - 11648 mRNA_3280 0.88 -2.0
282,301 + 11648 mRNA_3280 0.89 0.3
282,301 - 11648 mRNA_3280 0.89 0.4
282,312 + 1.3
282,314 - -0.4
282,320 - -1.0
282,327 + 0.1
282,329 + 0.1
282,330 - -0.1
282,331 + 0.1
282,333 - 0.7
282,334 - 2.0
282,335 + 0.1
282,336 + 0.7
282,340 + 1.7
282,341 + -0.4
282,342 + 0.4
282,342 + -1.0
282,345 + 0.1
282,349 + 0.8
282,350 + -0.8
282,351 - -0.6
282,358 - -0.2
282,358 - -0.4
282,369 - 0.3
282,380 - -0.3
282,402 + 0.0
282,410 - -0.4
282,412 + -0.1
282,413 + 0.0
282,428 + 1.4
282,446 - -0.8
282,449 + -0.1
282,456 + -0.6
282,490 + 0.1
282,492 + 0.3
282,492 + 0.8
282,493 + -1.4
282,494 + -0.4
282,498 + 1.8
282,505 + 0.5
282,509 - -0.3
282,515 + -0.2
282,515 + 0.0
282,517 + 0.3
282,517 - 1.4
282,518 + 1.7
282,519 - -0.1
282,632 - -0.1
282,640 - 0.5
282,648 - 1.7
282,650 - -0.1
282,650 - 0.9
282,656 - 0.2
282,661 + -0.2
282,662 + 0.6
282,665 - -0.3
282,667 + -2.4
282,675 + 0.2
282,679 + -0.3
282,683 + -0.8
282,707 + 0.4
282,780 + 0.6
282,805 - 11649 mRNA_3281 0.11 -0.1
282,813 - 11649 mRNA_3281 0.11 0.3
282,818 + 11649 mRNA_3281 0.12 0.8
282,829 - 11649 mRNA_3281 0.12 -0.2
282,859 - 11649 mRNA_3281 0.14 -0.1
282,860 - 11649 mRNA_3281 0.14 -1.8
282,870 - 11649 mRNA_3281 0.14 2.5
282,941 - 11649 mRNA_3281 0.17 1.2
282,985 - 11649 mRNA_3281 0.20 -1.1
282,995 + 11649 mRNA_3281 0.20 -0.2
283,158 + 11649 mRNA_3281 0.28 0.1
283,418 + 11649 mRNA_3281 0.40 -0.6
283,453 - 11649 mRNA_3281 0.42 1.3
283,709 - 11649 mRNA_3281 0.54 -1.4
283,716 - 11649 mRNA_3281 0.54 -0.4
284,621 + -1.3
284,733 - -0.3
284,779 - 1.5
284,938 + -0.3
285,041 + -1.1
285,052 + -1.4
285,471 - 11650 mRNA_3282 0.24 0.7
285,491 - 11650 mRNA_3282 0.26 1.0
285,608 - 11650 mRNA_3282 0.35 -1.2