Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3259

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3258: 11626 - K00791 miaA, TRIT1 tRNA dimethylallyltransferase, at 232790 to 234851 11626 mRNA_3259: 11627 - Hypothetical Protein, at 234995 to 236136 11627 mRNA_3260: 11628 - HMMPfam-Eukaryotic mitochondrial regulator protein-PF12298, at 236332 to 237668 11628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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234,361 + 11626 mRNA_3258 0.76 -1.5
234,606 - 11626 mRNA_3258 0.88 0.3
234,931 - -0.2
234,936 - -1.0
234,936 - -0.7
234,938 - 1.1
234,943 + 1.0
234,948 + 2.2
234,967 + -1.2
235,098 - 0.2
235,218 - 11627 mRNA_3259 0.20 3.1
235,362 - 11627 mRNA_3259 0.32 0.0
235,407 + 11627 mRNA_3259 0.36 0.4
235,839 + 11627 mRNA_3259 0.74 0.6
235,935 + 11627 mRNA_3259 0.82 1.3
236,152 + -0.4
236,271 - -0.6