Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3257

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3256: 11624 - K01681 ACO, acnA aconitate hydratase, at 224964 to 230364 11624 mRNA_3257: 11625 - K13869 SLC7A11 solute carrier family 7 (L-type amino acid transporter), member 11, at 230721 to 232745 11625 mRNA_3258: 11626 - K00791 miaA, TRIT1 tRNA dimethylallyltransferase, at 232790 to 234851 11626

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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229,774 + 11624 mRNA_3256 0.89 1.2
229,774 + 11624 mRNA_3256 0.89 1.3
229,904 - 0.5
230,078 - -0.2
230,080 + -0.2
230,234 - 1.9
230,481 + 0.3
230,523 + 0.8
230,675 + 0.1
230,677 + -0.5
230,766 + 0.9
230,815 - -0.4
230,819 + -0.6
230,841 + -1.3
230,977 + 11625 mRNA_3257 0.13 -0.3
231,153 + 11625 mRNA_3257 0.21 0.0
231,241 - 11625 mRNA_3257 0.26 -0.5
231,250 - 11625 mRNA_3257 0.26 0.9
231,265 + 11625 mRNA_3257 0.27 -0.1
231,285 + 11625 mRNA_3257 0.28 -1.1
231,299 + 11625 mRNA_3257 0.29 -0.4
231,420 - 11625 mRNA_3257 0.35 -1.1
231,564 + 11625 mRNA_3257 0.42 -0.4
231,668 - 11625 mRNA_3257 0.47 -1.2
231,710 - 11625 mRNA_3257 0.49 -0.2
231,806 + 11625 mRNA_3257 0.54 -1.4
231,859 + 11625 mRNA_3257 0.56 0.4
231,861 + 11625 mRNA_3257 0.56 0.7
231,870 - 11625 mRNA_3257 0.57 -0.7
231,888 + 11625 mRNA_3257 0.58 0.7
232,071 + 11625 mRNA_3257 0.67 1.4
232,298 + 11625 mRNA_3257 0.78 1.0
232,425 - 11625 mRNA_3257 0.84 -1.3
232,747 - 1.8
232,883 + -1.3