Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3207

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85934 to 91274 11574 mRNA_3207: 11575 - Hypothetical Protein, at 91562 to 92218 11575 mRNA_3208: 11576 - HMMPfam-Meiotically up-regulated gene 113-PF13455, at 92724 to 94778 11576

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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90,992 - -0.6
90,993 - -0.0
91,001 + -1.0
91,002 - -1.6
91,025 + -0.1
91,043 - -0.3
91,158 + -1.2
91,165 + -0.9
91,175 + -1.8
91,184 + -0.8
91,201 - 0.7
91,266 - 1.0
91,319 + -0.6
91,326 - -2.0
91,444 - 0.2
91,464 - -1.1
91,516 + 1.3
91,572 + -0.1
91,585 - 0.6
91,599 - 1.1
91,631 - 11575 mRNA_3207 0.11 -0.6
91,636 + 11575 mRNA_3207 0.11 0.8
91,647 + 11575 mRNA_3207 0.13 -0.2
91,658 + 11575 mRNA_3207 0.15 1.4
91,660 + 11575 mRNA_3207 0.15 -0.6
91,670 + 11575 mRNA_3207 0.16 -1.3
91,772 - 11575 mRNA_3207 0.32 0.2
91,782 - 11575 mRNA_3207 0.33 0.1
91,793 - 11575 mRNA_3207 0.35 -0.4
91,943 + 11575 mRNA_3207 0.58 0.5
92,069 - 11575 mRNA_3207 0.77 -0.4
92,227 - -0.9
92,235 + 1.8
92,656 - -0.9
93,094 + 11576 mRNA_3208 0.18 0.4