Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3206

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83287 to 85713 11573 mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85934 to 91274 11574 mRNA_3207: 11575 - Hypothetical Protein, at 91562 to 92218 11575

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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84,998 + 11573 mRNA_3205 0.70 1.0
85,132 + 11573 mRNA_3205 0.76 0.0
85,239 - 11573 mRNA_3205 0.80 -0.5
85,551 - 0.6
85,556 + 1.3
85,563 - 0.1
85,597 + 0.2
85,610 - -0.5
85,638 - -0.7
85,704 + 0.9
85,706 - -0.3
85,742 + 0.2
85,757 + 0.1
85,766 - -0.2
85,777 + -0.3
85,782 - -0.7
85,789 + -1.1
85,823 + 1.6
85,841 + 0.0
85,927 - 0.5
86,090 - -0.1
86,105 - -0.2
86,154 - -0.4
86,235 + 0.4
86,535 + 11574 mRNA_3206 0.11 0.4
86,685 + 11574 mRNA_3206 0.14 -0.4
86,690 - 11574 mRNA_3206 0.14 -0.3
86,927 - 11574 mRNA_3206 0.19 0.3
87,158 + 11574 mRNA_3206 0.23 0.3
87,245 + 11574 mRNA_3206 0.25 -0.1
87,397 - 11574 mRNA_3206 0.27 0.4
87,399 + 11574 mRNA_3206 0.27 -0.4
87,412 - 11574 mRNA_3206 0.28 -1.0
87,506 - 11574 mRNA_3206 0.29 0.7
87,524 - 11574 mRNA_3206 0.30 0.0
87,565 - 11574 mRNA_3206 0.31 0.2
87,582 + 11574 mRNA_3206 0.31 0.7
87,661 - 11574 mRNA_3206 0.32 -1.5
87,690 + 11574 mRNA_3206 0.33 0.0
87,978 + 11574 mRNA_3206 0.38 0.0
88,085 - 11574 mRNA_3206 0.40 0.9
88,370 - 11574 mRNA_3206 0.46 -1.8
88,612 + 11574 mRNA_3206 0.50 0.5
88,694 - 11574 mRNA_3206 0.52 -1.8
88,872 - 11574 mRNA_3206 0.55 1.3
89,269 + 11574 mRNA_3206 0.62 -1.0
89,431 + 11574 mRNA_3206 0.65 0.1
89,635 + 11574 mRNA_3206 0.69 -1.1
89,729 - 11574 mRNA_3206 0.71 -0.1
89,960 - 11574 mRNA_3206 0.75 0.1
90,000 + 11574 mRNA_3206 0.76 0.3
90,017 + 11574 mRNA_3206 0.76 -1.8
90,152 + 11574 mRNA_3206 0.79 -1.4
90,309 - 11574 mRNA_3206 0.82 0.0
90,437 - 11574 mRNA_3206 0.84 -0.8
90,557 + 11574 mRNA_3206 0.87 -0.6
90,992 - -0.6
90,993 - -0.0
91,001 + -1.0
91,002 - -1.6
91,025 + -0.1
91,043 - -0.3
91,158 + -1.2
91,165 + -0.9
91,175 + -1.8
91,184 + -0.8
91,201 - 0.7
91,266 - 1.0
91,319 + -0.6
91,326 - -2.0
91,444 - 0.2
91,464 - -1.1
91,516 + 1.3
91,572 + -0.1
91,585 - 0.6
91,599 - 1.1
91,631 - 11575 mRNA_3207 0.11 -0.6
91,636 + 11575 mRNA_3207 0.11 0.8
91,647 + 11575 mRNA_3207 0.13 -0.2
91,658 + 11575 mRNA_3207 0.15 1.4
91,660 + 11575 mRNA_3207 0.15 -0.6
91,670 + 11575 mRNA_3207 0.16 -1.3
91,772 - 11575 mRNA_3207 0.32 0.2
91,782 - 11575 mRNA_3207 0.33 0.1
91,793 - 11575 mRNA_3207 0.35 -0.4
91,943 + 11575 mRNA_3207 0.58 0.5
92,069 - 11575 mRNA_3207 0.77 -0.4
92,227 - -0.9
92,235 + 1.8