Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3205

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3204: 11572 - SUPERFAMILY--SSF69118, at 82145 to 83066 11572 mRNA_3205: 11573 - K13281 uvsE, UVE1 UV DNA damage endonuclease, at 83287 to 85713 11573 mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85934 to 91274 11574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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82,653 - 11572 mRNA_3204 0.55 0.1
82,940 + 11572 mRNA_3204 0.86 0.3
83,124 + 0.7
83,137 + -1.0
83,172 - -0.1
83,263 - 1.2
83,281 - -0.2
83,432 - 0.5
83,585 + 11573 mRNA_3205 0.12 -1.3
83,611 + 11573 mRNA_3205 0.13 1.1
83,709 + 11573 mRNA_3205 0.17 -1.7
83,822 - 11573 mRNA_3205 0.22 0.7
83,827 - 11573 mRNA_3205 0.22 1.1
83,832 + 11573 mRNA_3205 0.22 0.6
83,989 + 11573 mRNA_3205 0.29 0.2
84,009 - 11573 mRNA_3205 0.30 0.4
84,016 + 11573 mRNA_3205 0.30 0.4
84,105 - 11573 mRNA_3205 0.34 -0.8
84,165 - 11573 mRNA_3205 0.36 0.0
84,337 - 11573 mRNA_3205 0.43 -0.0
84,442 - 11573 mRNA_3205 0.48 -0.1
84,740 + 11573 mRNA_3205 0.60 -0.8
84,748 - 11573 mRNA_3205 0.60 0.2
84,820 + 11573 mRNA_3205 0.63 1.0
84,820 + 11573 mRNA_3205 0.63 -0.9
84,893 + 11573 mRNA_3205 0.66 -0.7
84,998 + 11573 mRNA_3205 0.70 1.0
85,132 + 11573 mRNA_3205 0.76 0.0
85,239 - 11573 mRNA_3205 0.80 -0.5
85,551 - 0.6
85,556 + 1.3
85,563 - 0.1
85,597 + 0.2
85,610 - -0.5
85,638 - -0.7
85,704 + 0.9
85,706 - -0.3
85,742 + 0.2
85,757 + 0.1
85,766 - -0.2
85,777 + -0.3
85,782 - -0.7
85,789 + -1.1
85,823 + 1.6
85,841 + 0.0
85,927 - 0.5
86,090 - -0.1
86,105 - -0.2
86,154 - -0.4
86,235 + 0.4
86,535 + 11574 mRNA_3206 0.11 0.4
86,685 + 11574 mRNA_3206 0.14 -0.4
86,690 - 11574 mRNA_3206 0.14 -0.3