Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3175

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10754 to 11960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12407 to 17406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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11,991 + 0.8
12,077 + -0.2
12,411 + -0.1
12,584 + 0.7
12,995 + 11543 mRNA_3175 0.12 0.3
13,364 - 11543 mRNA_3175 0.19 1.7
13,388 - 11543 mRNA_3175 0.20 1.4
13,408 + 11543 mRNA_3175 0.20 -2.1
13,424 + 11543 mRNA_3175 0.20 0.6
13,509 - 11543 mRNA_3175 0.22 0.0
13,543 + 11543 mRNA_3175 0.23 1.2
13,605 + 11543 mRNA_3175 0.24 -0.6
13,714 - 11543 mRNA_3175 0.26 0.4
13,818 + 11543 mRNA_3175 0.28 0.8
13,845 - 11543 mRNA_3175 0.29 -0.5
14,006 - 11543 mRNA_3175 0.32 -0.7
14,112 + 11543 mRNA_3175 0.34 0.2
14,133 + 11543 mRNA_3175 0.35 1.1
14,250 - 11543 mRNA_3175 0.37 1.2
14,270 - 11543 mRNA_3175 0.37 -1.2
14,290 + 11543 mRNA_3175 0.38 2.2
14,290 + 11543 mRNA_3175 0.38 -0.5
14,292 - 11543 mRNA_3175 0.38 -0.7
14,387 - 11543 mRNA_3175 0.40 0.8
14,397 - 11543 mRNA_3175 0.40 -0.7
14,425 - 11543 mRNA_3175 0.40 0.2
14,599 + 11543 mRNA_3175 0.44 2.5
14,713 - 11543 mRNA_3175 0.46 -1.0
14,956 + 11543 mRNA_3175 0.51 1.7
15,195 - 11543 mRNA_3175 0.56 -0.8
15,196 + 11543 mRNA_3175 0.56 0.8
15,249 + 11543 mRNA_3175 0.57 0.3
15,288 - 11543 mRNA_3175 0.58 -0.1
15,289 + 11543 mRNA_3175 0.58 0.4
15,548 - 11543 mRNA_3175 0.63 0.4
15,560 + 11543 mRNA_3175 0.63 0.5
15,848 + 11543 mRNA_3175 0.69 0.2
16,181 + 11543 mRNA_3175 0.75 0.7
16,270 - 11543 mRNA_3175 0.77 -0.4
16,290 + 11543 mRNA_3175 0.78 0.3
16,379 - 11543 mRNA_3175 0.79 0.6
16,389 + 11543 mRNA_3175 0.80 -0.2
16,414 + 11543 mRNA_3175 0.80 0.4
16,869 - 11543 mRNA_3175 0.89 -0.4
17,120 - 1.5
17,136 - -0.1
17,151 - 0.4
17,239 + -0.7
17,276 - 1.4
17,290 - 0.4
17,299 + 1.5
17,310 + 0.7
17,316 - -1.9
17,445 - -0.3
17,463 + -0.9
17,479 + 1.0
17,581 - 1.2
17,605 - 1.0
17,607 - -0.3
17,616 + 1.4
17,631 - -0.9
17,712 - -0.8
17,739 - -0.0
17,742 - 0.9
17,772 - 1.9