Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3171

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6329 to 7697 11540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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3,407 - -0.0
3,547 - 0.5
3,604 + 0.7
3,607 + 0.3
3,739 - -0.5
3,768 + -0.8
4,061 + -0.3
4,136 - 0.8
4,162 + -0.1
4,176 + 0.0
4,323 - 11539 mRNA_3171 0.14 0.1
4,361 + 11539 mRNA_3171 0.16 -2.1
4,776 + 11539 mRNA_3171 0.41 -1.8
4,865 + 11539 mRNA_3171 0.46 0.9
4,880 + 11539 mRNA_3171 0.47 -0.8
5,068 + 11539 mRNA_3171 0.58 1.2
5,216 + 11539 mRNA_3171 0.67 0.4
5,224 - 11539 mRNA_3171 0.68 -0.7
5,341 - 11539 mRNA_3171 0.75 -0.8
5,477 + 11539 mRNA_3171 0.83 -1.1
5,496 - 11539 mRNA_3171 0.84 -1.2
5,503 + 11539 mRNA_3171 0.84 -5.5
5,510 + 11539 mRNA_3171 0.85 0.6
5,514 + 11539 mRNA_3171 0.85 0.5
5,600 + -3.1
5,646 - -0.8
5,663 - -2.1
5,664 + -1.4
5,769 + -1.9
5,779 - -0.4
5,781 + -1.8
5,795 - 0.1
5,801 - -0.9
5,801 + -0.8
5,803 - -0.2
5,822 - 0.2
5,824 + -1.5
5,828 - -0.1
5,835 - -0.2
5,836 - 1.4
5,836 + 0.2
5,841 - 0.4
5,842 + -0.7
5,852 - 0.0
5,868 - -0.8
5,971 + 0.0
5,974 + 0.4
5,974 - -2.1
5,978 + -0.7
5,979 - -0.7
5,981 + -1.0
5,983 + 0.6
5,984 + -0.3
5,989 - -0.6
5,991 + -0.8
6,000 + 1.3
6,001 + -1.6
6,002 - -1.1
6,008 + 0.3
6,040 - 1.3
6,068 + -2.0
6,084 + 1.7
6,084 - -0.3
6,089 + -2.6
6,094 - -0.1
6,095 - -2.8
6,096 + -1.2
6,097 + -0.5
6,099 - 1.6
6,100 + -0.6
6,110 - 0.3
6,150 + 0.3
6,153 - -0.7
6,167 + 0.2
6,180 + 0.3
6,186 - 0.4
6,194 + -3.0
6,204 + 1.3
6,230 + 1.0
6,252 - 0.8
6,310 - -0.2
6,311 - -2.1
6,321 - 0.9
6,323 + 0.7
6,327 + 0.9
6,328 - -0.8
6,330 - 0.2
6,332 - -1.1
6,333 + -2.5
6,333 + -2.9
6,334 - -0.7
6,343 + -1.0
6,347 - -0.5
6,348 + -1.4
6,349 + 0.0
6,349 - 0.0
6,353 + 1.0
6,362 - -1.3
6,364 + -0.2
6,368 + -1.1
6,369 + 1.0
6,370 + -2.9
6,372 + -1.2
6,376 - -1.0
6,387 + 1.6
6,390 - 0.4
6,392 + -0.6
6,403 + -0.2
6,408 + -0.5
6,410 + -0.5
6,419 + -0.2
6,466 + 11540 mRNA_3172 0.10 -1.3
6,471 + 11540 mRNA_3172 0.10 0.8
6,501 + 11540 mRNA_3172 0.13 -1.2
6,512 + 11540 mRNA_3172 0.13 -2.3
6,520 + 11540 mRNA_3172 0.14 0.5
6,556 - 11540 mRNA_3172 0.17 3.6
6,563 + 11540 mRNA_3172 0.17 1.2
6,570 + 11540 mRNA_3172 0.18 -2.6
6,577 + 11540 mRNA_3172 0.18 1.4
6,580 + 11540 mRNA_3172 0.18 0.2
6,652 - 11540 mRNA_3172 0.24 -0.0
6,680 + 11540 mRNA_3172 0.26 -1.8
6,730 - 11540 mRNA_3172 0.29 0.9
6,750 - 11540 mRNA_3172 0.31 0.6