Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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416,634 - 11511 mRNA_3143 0.49 -0.7
416,758 - 11511 mRNA_3143 0.58 -0.7
416,791 + 11511 mRNA_3143 0.60 -0.9
416,807 + 11511 mRNA_3143 0.61 -1.4
416,884 - 11511 mRNA_3143 0.67 -0.0
416,914 - 11511 mRNA_3143 0.69 -0.4
416,955 + 11511 mRNA_3143 0.72 2.0
417,060 - 11511 mRNA_3143 0.79 1.0
417,093 + 11511 mRNA_3143 0.81 -0.0
417,095 + 11511 mRNA_3143 0.81 -1.6
417,197 - 11511 mRNA_3143 0.89 1.2
417,214 + 11511 mRNA_3143 0.90 1.9
417,228 - -0.9
417,239 + 0.7
417,250 - -0.4
417,378 - -0.8
417,383 - -0.3
417,385 + -0.4
417,392 - -1.5
417,392 + 1.5
417,395 - 0.0
417,396 - -0.9
417,396 - 0.1
417,398 - -2.5
417,402 - -0.1
417,405 + 0.2
417,423 + -0.3
417,427 + -0.5
417,431 - 0.6
417,436 - -0.4
417,446 - 0.3
417,449 - 0.2
417,454 + -0.5
417,462 + 0.9
417,463 + -0.3
417,478 + 1.1
417,495 - -0.1
417,557 + 0.3
417,576 + -1.5
417,607 - -0.4
417,609 + -0.7
417,616 - 0.3
417,776 - 0.1
417,777 + 0.4
417,955 + 11512 mRNA_3144 0.11 0.6
418,097 - 11512 mRNA_3144 0.15 -0.9
418,476 - 11512 mRNA_3144 0.25 0.5
419,024 - 11512 mRNA_3144 0.39 1.3
419,439 + 11512 mRNA_3144 0.50 -1.0
420,002 + 11512 mRNA_3144 0.64 -1.4
420,178 - 11512 mRNA_3144 0.69 -0.3
420,278 - 11512 mRNA_3144 0.72 0.1
420,296 - 11512 mRNA_3144 0.72 0.4
420,432 + 11512 mRNA_3144 0.76 -0.5
420,644 - 11512 mRNA_3144 0.81 -0.8
420,740 + 11512 mRNA_3144 0.84 -1.7
420,845 - 11512 mRNA_3144 0.86 -0.7
420,911 - 11512 mRNA_3144 0.88 0.6
420,952 + 11512 mRNA_3144 0.89 0.8
421,046 - -2.0
421,054 + 0.7
421,068 + -0.5
421,164 - 1.0
421,329 - -0.1
421,438 - -0.3
421,469 - -2.5
421,470 - -1.4
421,476 + 0.3
421,478 - -0.5
421,480 + 0.6
421,494 - 0.4
421,526 - 0.9
421,594 + -0.1
421,596 - 0.6
421,603 - 0.1
421,614 + 0.7
421,617 - -2.2
421,618 + -0.0
421,622 - 0.6
421,622 - 1.9
421,624 - 0.4
421,634 - -0.0
421,652 + 0.5
421,656 + -0.9
421,658 + 0.0
421,660 + 0.9
421,667 + 1.3
421,676 + 0.5
421,717 - -2.4
421,730 + -1.4
421,730 - -0.2
421,732 - 0.3
421,735 + -1.0
421,737 - -0.1
421,738 + 1.2
421,739 + -0.4
421,741 - -0.8
421,747 - 0.4
421,753 - 1.3
421,758 + -2.0
421,759 + 1.5
421,759 + 1.5
421,760 + 0.8
421,760 + 0.0
421,760 + 0.5
421,762 - -0.1
421,763 - 0.3
421,764 - 0.1
421,765 + 0.2
421,766 + -0.4
421,768 + 2.2
421,776 + -0.0
421,779 + -2.2
421,781 + -0.6
421,784 + 0.6
421,793 + 0.0
421,796 - -0.2
421,798 - 1.6
421,798 - -0.1
421,806 - -0.9
421,806 - -0.1
421,811 + 2.5
421,815 + 0.5
421,825 + 0.0
421,833 - 1.1
421,940 + -0.9
421,942 - 2.2
421,956 - 0.1
421,956 - -0.1
421,959 - -0.6
421,963 + -0.3
421,969 - -1.3
421,972 - -1.0
421,981 - 1.7
421,984 - 0.3
421,985 - -0.0
421,997 - 2.3
421,998 + 1.0
421,999 + -0.4
422,002 + -0.1
422,018 - 0.3
422,020 + 0.3
422,020 - 0.9
422,031 + 1.2
422,031 + 0.3
422,040 - 0.5
422,042 + 0.4
422,043 - -0.8
422,044 - -0.7
422,048 + -0.5
422,050 + -0.8
422,051 + 0.8
422,052 + 0.1
422,066 - 0.8
422,072 + -0.6
422,072 - 1.2
422,074 - 0.5
422,075 - -0.0
422,085 + 0.6
422,113 - -0.5
422,132 + 0.2
422,145 + 0.7
422,163 + -0.6
422,165 - -0.2
422,174 + -0.4
422,174 + -0.9
422,188 - -0.1
422,195 - 1.1
422,205 + 0.4
422,207 + 0.8
422,212 - -0.7
422,214 + 0.3
422,221 - -1.3
422,223 - -0.0
422,237 - 0.4
422,255 - -0.0
422,271 + 1.0
422,276 + 0.8
422,280 + 1.0
422,314 - 0.1
422,351 - -0.6
422,364 - -0.6