Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3129

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385430 to 386354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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384,442 + 11496 mRNA_3128 0.12 0.4
384,476 - 11496 mRNA_3128 0.15 -0.2
384,485 - 11496 mRNA_3128 0.17 1.7
384,508 - 11496 mRNA_3128 0.19 0.2
384,531 + 11496 mRNA_3128 0.22 -0.4
384,599 + 11496 mRNA_3128 0.30 1.0
384,619 + 11496 mRNA_3128 0.32 0.8
384,650 + 11496 mRNA_3128 0.36 0.6
384,741 + 11496 mRNA_3128 0.46 -0.9
384,741 + 11496 mRNA_3128 0.46 -0.5
384,741 + 11496 mRNA_3128 0.46 -0.6
384,741 + 11496 mRNA_3128 0.46 -0.9
384,744 + 11496 mRNA_3128 0.47 1.3
384,922 - 11496 mRNA_3128 0.67 0.2
384,929 + 11496 mRNA_3128 0.68 -0.6
384,948 + 11496 mRNA_3128 0.70 0.5
384,948 + 11496 mRNA_3128 0.70 -0.3
385,095 + 11496 mRNA_3128 0.87 -0.8
385,095 + 11496 mRNA_3128 0.87 -1.4
385,237 + -0.9
385,246 - -0.4
385,249 + -0.7
385,256 + -0.3
385,258 - -0.7
385,365 - -1.7
385,376 + 0.5
385,386 - 1.4
385,532 - 11497 mRNA_3129 0.11 -2.5
385,689 - 11497 mRNA_3129 0.28 0.2
385,696 - 11497 mRNA_3129 0.29 0.5
385,825 - 11497 mRNA_3129 0.43 0.2
385,838 + 11497 mRNA_3129 0.44 0.2
385,958 + 11497 mRNA_3129 0.57 0.0
385,987 - 11497 mRNA_3129 0.60 -2.3
386,110 - 11497 mRNA_3129 0.74 -0.1
386,116 - 11497 mRNA_3129 0.74 -0.2
386,127 - 11497 mRNA_3129 0.75 -0.1
386,136 - 11497 mRNA_3129 0.76 -4.0
386,139 - 11497 mRNA_3129 0.77 0.0
386,254 - 11497 mRNA_3129 0.89 -2.1
386,254 - 11497 mRNA_3129 0.89 1.2
386,256 - 11497 mRNA_3129 0.89 1.6
386,260 - 11497 mRNA_3129 0.90 0.1
386,265 + -0.9
386,266 - 1.1
386,267 + -1.2
386,273 - 0.6
386,278 + 1.2
386,292 + -0.4
386,387 + 1.3
386,410 + 0.1
386,418 - 0.3
386,430 - 0.1
386,430 - 1.5
386,431 + 0.9
386,434 + 0.7
386,437 - -1.3
386,534 + 0.2
386,545 - -0.4
386,549 - 0.3
386,566 - 0.5
386,713 - 0.7
386,731 + -0.6
386,845 - 0.2
386,855 - 0.3
387,131 + -0.3
387,132 - 0.7
387,132 - -0.2
387,145 + 0.1
387,148 + 0.2
387,152 - 2.5
387,154 + 0.4
387,154 + -0.2
387,159 + 0.3
387,161 + -0.2
387,168 + -1.6
387,173 + 0.8
387,292 - 0.3
387,300 + 0.1
387,307 + 3.2
387,308 - -0.4
387,312 - -3.8
387,313 + 1.2
387,332 + 0.0
387,333 + 0.3