Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3128

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385430 to 386354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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383,425 + 11495 mRNA_3127 0.72 0.1
383,455 + 11495 mRNA_3127 0.73 -0.4
383,585 - 11495 mRNA_3127 0.77 -1.0
383,599 - 11495 mRNA_3127 0.78 0.9
383,613 + 11495 mRNA_3127 0.78 1.1
383,762 - 11495 mRNA_3127 0.83 -0.3
384,060 + 0.5
384,122 - -0.9
384,271 + 0.1
384,348 + 0.2
384,349 - -0.2
384,352 + 0.7
384,442 + 11496 mRNA_3128 0.12 0.4
384,476 - 11496 mRNA_3128 0.15 -0.2
384,485 - 11496 mRNA_3128 0.17 1.7
384,508 - 11496 mRNA_3128 0.19 0.2
384,531 + 11496 mRNA_3128 0.22 -0.4
384,599 + 11496 mRNA_3128 0.30 1.0
384,619 + 11496 mRNA_3128 0.32 0.8
384,650 + 11496 mRNA_3128 0.36 0.6
384,741 + 11496 mRNA_3128 0.46 -0.9
384,741 + 11496 mRNA_3128 0.46 -0.5
384,741 + 11496 mRNA_3128 0.46 -0.6
384,741 + 11496 mRNA_3128 0.46 -0.9
384,744 + 11496 mRNA_3128 0.47 1.3
384,922 - 11496 mRNA_3128 0.67 0.2
384,929 + 11496 mRNA_3128 0.68 -0.6
384,948 + 11496 mRNA_3128 0.70 0.5
384,948 + 11496 mRNA_3128 0.70 -0.3
385,095 + 11496 mRNA_3128 0.87 -0.8
385,095 + 11496 mRNA_3128 0.87 -1.4
385,237 + -0.9
385,246 - -0.4
385,249 + -0.7
385,256 + -0.3
385,258 - -0.7
385,365 - -1.7
385,376 + 0.5
385,386 - 1.4
385,532 - 11497 mRNA_3129 0.11 -2.5
385,689 - 11497 mRNA_3129 0.28 0.2
385,696 - 11497 mRNA_3129 0.29 0.5
385,825 - 11497 mRNA_3129 0.43 0.2
385,838 + 11497 mRNA_3129 0.44 0.2
385,958 + 11497 mRNA_3129 0.57 0.0
385,987 - 11497 mRNA_3129 0.60 -2.3
386,110 - 11497 mRNA_3129 0.74 -0.1
386,116 - 11497 mRNA_3129 0.74 -0.2
386,127 - 11497 mRNA_3129 0.75 -0.1
386,136 - 11497 mRNA_3129 0.76 -4.0
386,139 - 11497 mRNA_3129 0.77 0.0