Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3117

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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356,839 - 0.3
356,990 - -0.7
357,161 + 11484 mRNA_3116 0.26 0.1
357,164 - 11484 mRNA_3116 0.27 0.8
357,196 + 11484 mRNA_3116 0.32 1.0
357,287 - 11484 mRNA_3116 0.47 2.5
357,305 + 11484 mRNA_3116 0.50 0.6
357,306 + 11484 mRNA_3116 0.50 -0.9
357,356 - 11484 mRNA_3116 0.58 0.5
357,426 + 11484 mRNA_3116 0.69 0.2
357,578 - 1.2
357,582 - 0.7
357,604 - 0.4
357,610 - -2.1
357,643 - -0.1
357,705 + -1.1
357,757 + 0.2
358,047 + 11485 mRNA_3117 0.27 0.8
358,058 - 11485 mRNA_3117 0.28 0.3
358,077 - 11485 mRNA_3117 0.30 2.4
358,107 - 11485 mRNA_3117 0.33 0.7
358,368 - 11485 mRNA_3117 0.57 -0.2
358,471 - 11485 mRNA_3117 0.66 -0.1
358,472 + 11485 mRNA_3117 0.67 0.6
358,614 + 11485 mRNA_3117 0.80 -1.8
358,627 - 11485 mRNA_3117 0.81 -0.9
358,627 + 11485 mRNA_3117 0.81 1.7
358,638 - 11485 mRNA_3117 0.82 1.7
358,734 + -0.3
358,761 - 1.4
358,782 + 2.0
358,892 + 0.8
358,905 + 0.4
358,905 - 0.3
358,907 - -0.5
358,912 + 1.0
358,916 - -1.0
358,927 + 0.5
358,930 + 0.3
358,934 + 0.5
359,049 - 0.5
359,052 - 0.8
359,058 - 0.1
359,059 + -0.8
359,064 - 1.8
359,070 + 0.7
359,084 + 1.8
359,086 + 1.3
359,195 - -0.1
359,231 - 0.6
359,231 - -0.6
359,269 + -0.4
359,303 - -0.4
359,346 - 0.6
359,369 + 0.5
359,492 - 0.9
359,497 + -1.3
359,528 - 0.2
359,549 - -1.5
359,553 + -0.5
359,618 - 0.5
359,644 - 0.9
359,659 + 0.7
359,668 + 1.2
359,668 + -0.3
359,801 - 11486 mRNA_3118 0.14 -0.9
359,804 + 11486 mRNA_3118 0.14 0.0