Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3093

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300048 to 303992 11460 mRNA_3093: 11461 - Hypothetical Protein, at 304363 to 305282 11461 mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305611 to 307227 11462

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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303,449 - 11460 mRNA_3092 0.86 -0.5
303,458 + 11460 mRNA_3092 0.86 1.8
303,460 + 11460 mRNA_3092 0.86 -0.4
303,477 + 11460 mRNA_3092 0.87 -1.1
303,576 + 11460 mRNA_3092 0.89 -0.6
303,606 - 1.0
303,607 + 0.0
303,610 - -0.5
303,614 - 0.9
303,643 + 0.0
303,744 - 0.4
303,748 - 1.5
303,749 + -1.8
303,760 - -0.5
303,760 + 1.8
303,766 + 1.7
303,891 - 1.7
303,898 - 0.0
304,033 + 0.1
304,038 - 0.4
304,038 + -0.4
304,041 - 0.8
304,045 - 0.8
304,046 + -0.8
304,052 + 1.3
304,054 - 1.0
304,166 - 0.1
304,222 + -0.1
304,371 + 0.5
304,445 + -0.0
304,482 + 11461 mRNA_3093 0.13 -1.2
304,494 + 11461 mRNA_3093 0.14 0.8
304,599 + 11461 mRNA_3093 0.26 0.2
304,609 - 11461 mRNA_3093 0.27 -1.9
304,687 - 11461 mRNA_3093 0.35 0.1
304,695 + 11461 mRNA_3093 0.36 -0.6
304,753 + 11461 mRNA_3093 0.42 1.0
304,926 - 11461 mRNA_3093 0.61 0.9
304,959 + 11461 mRNA_3093 0.65 -0.2
304,999 + 11461 mRNA_3093 0.69 -0.3
305,056 - 11461 mRNA_3093 0.75 -0.4
305,060 - 11461 mRNA_3093 0.76 0.5
305,077 - 11461 mRNA_3093 0.78 0.4
305,208 + -0.6
305,211 - -1.5
305,219 + -1.5
305,223 + 0.6
305,339 - 0.5
305,364 + -1.0
305,365 + -1.2
305,367 + 1.3
305,369 + -0.1
305,376 - -0.2
305,377 + 0.8
305,378 - -0.2
305,381 - 1.5
305,381 - -0.3
305,470 + 1.3
305,481 - 1.8
305,483 + 2.0
305,492 + 0.4
305,492 + -0.2
305,508 + 0.4
305,508 - 0.8
305,512 - -2.0
305,513 - -0.9
305,516 - -0.4
305,516 + 0.7
305,520 - -1.2
305,522 + -0.6
305,524 - -0.9
305,535 - 0.2
305,542 + 1.1
305,562 - -0.4
305,628 + 0.9
305,636 - 0.4
305,660 - 0.4
305,664 - -1.3
305,680 + 1.4
305,683 - -0.8
305,687 + 0.7
305,694 - -0.6
305,725 - 0.6
305,797 - 11462 mRNA_3094 0.12 0.3
305,803 - 11462 mRNA_3094 0.12 -0.7
305,816 + 11462 mRNA_3094 0.13 -0.7
305,834 - 11462 mRNA_3094 0.14 -0.0
305,847 + 11462 mRNA_3094 0.15 1.6
305,848 + 11462 mRNA_3094 0.15 0.3
305,876 - 11462 mRNA_3094 0.16 -0.9
305,931 - 11462 mRNA_3094 0.20 -1.2
305,979 + 11462 mRNA_3094 0.23 -0.2
305,989 + 11462 mRNA_3094 0.23 0.0
306,002 - 11462 mRNA_3094 0.24 0.7
306,112 + 11462 mRNA_3094 0.31 0.3
306,128 + 11462 mRNA_3094 0.32 -1.2
306,252 - 11462 mRNA_3094 0.40 -1.3