Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3075

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252187 to 260484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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251,443 - 11442 mRNA_3074 0.70 -0.4
251,570 - 11442 mRNA_3074 0.77 -0.2
251,577 + 11442 mRNA_3074 0.78 1.8
251,720 + 11442 mRNA_3074 0.86 -0.6
251,734 - 11442 mRNA_3074 0.87 -1.2
251,738 + 11442 mRNA_3074 0.87 1.2
251,739 + 11442 mRNA_3074 0.87 -0.1
251,739 - 11442 mRNA_3074 0.87 -0.4
251,761 + 11442 mRNA_3074 0.88 -0.2
251,833 + -0.1
251,853 - -0.3
251,854 + -2.1
251,867 + 0.2
251,869 + 0.2
251,879 + 0.5
251,891 + -0.4
251,896 - 0.1
251,980 - -0.6
251,981 + 0.4
251,988 - 0.3
252,011 + 0.4
252,031 - 0.1
252,043 + -0.3
252,043 + -0.1
252,051 - -0.3
252,054 + -0.1
252,054 + -0.0
252,057 - -0.4
252,073 - -0.2
252,176 - 0.4
252,176 - 1.6
252,205 - -1.4
252,342 + 0.6
252,437 + -0.5
252,453 + 0.4
252,501 + 0.2
252,541 + 0.2
252,647 - 1.1
252,653 + 0.4
252,777 + 1.6
252,914 + -0.0
252,917 + 0.2
253,133 + 11443 mRNA_3075 0.11 -1.0
253,366 - 11443 mRNA_3075 0.14 1.6
253,450 - 11443 mRNA_3075 0.15 -1.3
253,463 - 11443 mRNA_3075 0.15 0.0
253,511 - 11443 mRNA_3075 0.16 1.2
253,525 + 11443 mRNA_3075 0.16 0.6
253,538 + 11443 mRNA_3075 0.16 1.0
253,540 - 11443 mRNA_3075 0.16 0.7
253,559 - 11443 mRNA_3075 0.17 0.5
253,605 + 11443 mRNA_3075 0.17 -0.7
253,617 + 11443 mRNA_3075 0.17 -0.2
253,624 + 11443 mRNA_3075 0.17 1.1
253,636 - 11443 mRNA_3075 0.17 0.2
253,648 - 11443 mRNA_3075 0.18 -0.2
253,660 - 11443 mRNA_3075 0.18 -0.5
253,709 - 11443 mRNA_3075 0.18 -0.5
253,803 - 11443 mRNA_3075 0.19 0.0
253,906 + 11443 mRNA_3075 0.21 0.7
253,915 + 11443 mRNA_3075 0.21 -0.7
253,963 + 11443 mRNA_3075 0.21 -0.3
253,971 - 11443 mRNA_3075 0.21 -0.1
254,081 - 11443 mRNA_3075 0.23 0.3
254,085 + 11443 mRNA_3075 0.23 1.4
254,207 + 11443 mRNA_3075 0.24 0.2
254,263 - 11443 mRNA_3075 0.25 -1.9
254,269 + 11443 mRNA_3075 0.25 1.3
254,338 - 11443 mRNA_3075 0.26 -0.2
254,372 - 11443 mRNA_3075 0.26 -1.7
254,418 - 11443 mRNA_3075 0.27 0.3
254,539 - 11443 mRNA_3075 0.28 -0.1
254,585 + 11443 mRNA_3075 0.29 -0.9
254,706 + 11443 mRNA_3075 0.30 -0.2
254,710 - 11443 mRNA_3075 0.30 0.9
254,712 + 11443 mRNA_3075 0.30 0.8
254,797 - 11443 mRNA_3075 0.31 0.1
254,868 + 11443 mRNA_3075 0.32 0.5
254,972 + 11443 mRNA_3075 0.34 0.1
255,080 + 11443 mRNA_3075 0.35 1.4
255,136 - 11443 mRNA_3075 0.36 -0.6
255,157 + 11443 mRNA_3075 0.36 0.1
255,295 - 11443 mRNA_3075 0.37 0.8
255,303 + 11443 mRNA_3075 0.38 0.8
255,544 + 11443 mRNA_3075 0.40 0.4
255,585 + 11443 mRNA_3075 0.41 0.9
255,609 - 11443 mRNA_3075 0.41 0.3
255,644 - 11443 mRNA_3075 0.42 0.6
255,685 - 11443 mRNA_3075 0.42 -0.0
255,734 - 11443 mRNA_3075 0.43 -0.4
255,768 + 11443 mRNA_3075 0.43 0.2
255,834 + 11443 mRNA_3075 0.44 -0.0
255,834 + 11443 mRNA_3075 0.44 1.1
255,920 + 11443 mRNA_3075 0.45 0.2
255,921 - 11443 mRNA_3075 0.45 0.4
255,938 - 11443 mRNA_3075 0.45 0.9
256,163 + 11443 mRNA_3075 0.48 1.9
256,179 - 11443 mRNA_3075 0.48 0.4
256,216 - 11443 mRNA_3075 0.49 4.5
256,241 - 11443 mRNA_3075 0.49 0.9
256,280 - 11443 mRNA_3075 0.49 1.4
256,353 - 11443 mRNA_3075 0.50 1.0
256,358 - 11443 mRNA_3075 0.50 0.5
256,369 - 11443 mRNA_3075 0.50 -1.1
256,517 + 11443 mRNA_3075 0.52 -0.1
256,587 - 11443 mRNA_3075 0.53 -0.6
256,692 - 11443 mRNA_3075 0.54 -1.2
256,892 - 11443 mRNA_3075 0.57 1.7
256,940 + 11443 mRNA_3075 0.57 -0.6
257,031 - 11443 mRNA_3075 0.58 1.5
257,050 - 11443 mRNA_3075 0.59 -2.2
257,105 - 11443 mRNA_3075 0.59 0.5
257,195 - 11443 mRNA_3075 0.60 -0.4
257,227 + 11443 mRNA_3075 0.61 0.9
257,346 + 11443 mRNA_3075 0.62 1.0
257,355 + 11443 mRNA_3075 0.62 -0.5
257,484 - 11443 mRNA_3075 0.64 0.1
257,536 + 11443 mRNA_3075 0.64 0.4
257,588 + 11443 mRNA_3075 0.65 0.1
257,620 - 11443 mRNA_3075 0.65 0.9
257,638 - 11443 mRNA_3075 0.66 0.3
257,901 + 11443 mRNA_3075 0.69 0.6
258,000 + 11443 mRNA_3075 0.70 1.2
258,221 - 11443 mRNA_3075 0.73 -1.2
258,430 - 11443 mRNA_3075 0.75 0.8
258,434 - 11443 mRNA_3075 0.75 0.5
258,726 + 11443 mRNA_3075 0.79 -0.2
258,750 - 11443 mRNA_3075 0.79 0.4
258,759 - 11443 mRNA_3075 0.79 0.2
258,764 + 11443 mRNA_3075 0.79 0.3
258,900 - 11443 mRNA_3075 0.81 0.4
258,942 + 11443 mRNA_3075 0.81 0.4
258,989 + 11443 mRNA_3075 0.82 -0.1
259,069 + 11443 mRNA_3075 0.83 0.8
259,138 + 11443 mRNA_3075 0.84 -0.7
259,160 - 11443 mRNA_3075 0.84 0.7
259,193 + 11443 mRNA_3075 0.84 -0.1
259,471 - 11443 mRNA_3075 0.88 0.1
259,474 - 11443 mRNA_3075 0.88 0.0
259,481 + 11443 mRNA_3075 0.88 0.2
259,482 + 11443 mRNA_3075 0.88 0.2
259,497 - 11443 mRNA_3075 0.88 1.1
259,543 + 11443 mRNA_3075 0.89 1.9
259,565 - 11443 mRNA_3075 0.89 -0.8
259,568 + 11443 mRNA_3075 0.89 0.2
259,671 + 2.2
259,937 - -0.2
259,953 + -1.0
259,964 - -1.2
260,105 - -0.3
260,221 + 0.6
260,273 + -3.6
260,633 - -1.7
260,657 - 0.5
260,796 - 1.2
260,815 + -0.0
260,966 + 1.8
261,095 - -0.7
261,242 - 0.5
261,260 + 0.6
261,261 - -0.0
261,265 + 0.3
261,269 - 0.1
261,390 - -0.1
261,391 + -0.7
261,396 - 0.3
261,400 - -0.4
261,400 - -0.2
261,401 + 0.0
261,412 - 0.7
261,415 + 1.2
261,419 + 0.1
261,420 + -0.2
261,420 - -0.2
261,427 - -0.3
261,427 + 0.4
261,428 - -0.2
261,429 + 0.1
261,432 - -0.6
261,438 - 1.1
261,440 - 0.4
261,440 - 0.6
261,442 - -0.6
261,442 - 0.6
261,443 - -0.0
261,443 - 0.2
261,445 - -1.1
261,449 + -2.4
261,449 + 1.3
261,451 - -0.2
261,454 - -0.3
261,456 - 1.2
261,459 + 0.4
261,478 + -0.5