Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3074

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252187 to 260484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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249,406 + 1.5
249,430 + 0.5
249,552 + 11441 mRNA_3073 0.20 -1.6
249,695 + 11441 mRNA_3073 0.39 1.0
249,696 - 11441 mRNA_3073 0.39 1.4
249,701 + 11441 mRNA_3073 0.39 1.8
249,762 - 11441 mRNA_3073 0.47 -0.2
249,822 - 11441 mRNA_3073 0.55 0.4
249,841 + 11441 mRNA_3073 0.58 2.3
249,845 + 11441 mRNA_3073 0.58 0.7
249,858 + 11441 mRNA_3073 0.60 -0.7
249,860 + 11441 mRNA_3073 0.60 1.1
249,861 + 11441 mRNA_3073 0.61 2.7
249,898 + 11441 mRNA_3073 0.65 -1.3
249,927 - 11441 mRNA_3073 0.69 0.4
249,978 + 11441 mRNA_3073 0.76 -0.7
249,983 - 11441 mRNA_3073 0.77 0.2
250,002 + 11441 mRNA_3073 0.79 0.1
250,015 + 11441 mRNA_3073 0.81 0.4
250,017 - 11441 mRNA_3073 0.81 0.2
250,017 - 11441 mRNA_3073 0.81 -0.4
250,030 - 11441 mRNA_3073 0.83 1.1
250,132 + 1.3
250,137 - 1.5
250,138 + -0.0
250,143 + -0.1
250,166 - -0.8
250,283 - 0.7
250,290 - -0.5
250,302 + 0.9
250,304 + 1.0
250,327 - 0.1
250,478 + 11442 mRNA_3074 0.15 -0.3
250,597 - 11442 mRNA_3074 0.22 0.6
250,619 - 11442 mRNA_3074 0.23 0.5
250,730 + 11442 mRNA_3074 0.30 -0.5
250,851 - 11442 mRNA_3074 0.37 -0.9
250,852 + 11442 mRNA_3074 0.37 1.7
250,868 - 11442 mRNA_3074 0.38 0.3
250,879 + 11442 mRNA_3074 0.38 -0.5
250,986 + 11442 mRNA_3074 0.44 -0.4
251,009 + 11442 mRNA_3074 0.46 -1.0
251,073 - 11442 mRNA_3074 0.49 0.1
251,113 + 11442 mRNA_3074 0.51 -1.0
251,138 - 11442 mRNA_3074 0.53 0.8
251,156 + 11442 mRNA_3074 0.54 1.1
251,443 - 11442 mRNA_3074 0.70 -0.4
251,570 - 11442 mRNA_3074 0.77 -0.2
251,577 + 11442 mRNA_3074 0.78 1.8
251,720 + 11442 mRNA_3074 0.86 -0.6
251,734 - 11442 mRNA_3074 0.87 -1.2
251,738 + 11442 mRNA_3074 0.87 1.2
251,739 + 11442 mRNA_3074 0.87 -0.1
251,739 - 11442 mRNA_3074 0.87 -0.4
251,761 + 11442 mRNA_3074 0.88 -0.2
251,833 + -0.1
251,853 - -0.3
251,854 + -2.1
251,867 + 0.2
251,869 + 0.2
251,879 + 0.5
251,891 + -0.4
251,896 - 0.1
251,980 - -0.6
251,981 + 0.4
251,988 - 0.3
252,011 + 0.4
252,031 - 0.1
252,043 + -0.3
252,043 + -0.1
252,051 - -0.3
252,054 + -0.1
252,054 + -0.0
252,057 - -0.4
252,073 - -0.2
252,176 - 0.4
252,176 - 1.6
252,205 - -1.4
252,342 + 0.6
252,437 + -0.5
252,453 + 0.4
252,501 + 0.2
252,541 + 0.2
252,647 - 1.1
252,653 + 0.4
252,777 + 1.6
252,914 + -0.0
252,917 + 0.2