Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3055

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422 mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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207,643 - 11422 mRNA_3054 0.82 0.8
207,643 - 11422 mRNA_3054 0.82 0.4
207,818 + 1.1
207,925 + 0.4
207,955 - -1.1
208,071 - 0.5
208,092 - 0.9
208,096 + -2.3
208,099 - -0.2
208,100 - 0.2
208,101 + -0.6
208,103 + 1.2
208,108 - 1.5
208,108 + -0.6
208,108 + -0.7
208,112 - -0.6
208,118 + -0.6
208,123 - 0.1
208,124 + 0.3
208,155 - -1.0
208,223 + 0.5
208,228 - -0.1
208,229 + 0.4
208,239 - -1.0
208,248 + -0.5
208,253 + 0.4
208,259 - 0.7
208,392 - -0.9
208,397 - -0.3
208,400 - -0.6
208,414 + -1.2
208,420 + -1.6
208,523 + -0.6
208,561 - 0.6
208,653 + -2.4
208,681 + -0.4
208,689 + 0.9
208,806 - 11423 mRNA_3055 0.14 0.8
208,834 - 11423 mRNA_3055 0.16 0.5
208,839 + 11423 mRNA_3055 0.16 0.5
208,976 - 11423 mRNA_3055 0.25 1.5
209,004 + 11423 mRNA_3055 0.26 -1.5
209,114 + 11423 mRNA_3055 0.33 -0.6
209,404 - 11423 mRNA_3055 0.51 0.1
209,458 - 11423 mRNA_3055 0.55 0.7
209,611 - 11423 mRNA_3055 0.64 0.3
209,839 + 11423 mRNA_3055 0.78 -0.9
209,847 + 11423 mRNA_3055 0.79 0.1
210,000 - 11423 mRNA_3055 0.88 -0.3
210,001 + 11423 mRNA_3055 0.88 -1.3
210,018 + 11423 mRNA_3055 0.90 -0.9
210,149 + -1.2
210,189 - -0.1
210,307 - 1.2
210,320 + 1.6
210,333 + 0.4
210,347 + 1.1
210,410 + 1.0
210,500 + 0.5
210,618 + 11424 mRNA_3056 0.14 0.3
210,739 + 11424 mRNA_3056 0.23 -0.8
210,743 - 11424 mRNA_3056 0.23 1.0
210,774 - 11424 mRNA_3056 0.25 0.9
210,913 - 11424 mRNA_3056 0.35 1.3
210,984 + 11424 mRNA_3056 0.40 1.1
211,027 + 11424 mRNA_3056 0.43 0.5
211,181 + 11424 mRNA_3056 0.53 -0.1