Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3029

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3028: 11396 - Hypothetical Protein, at 132999 to 134584 11396 mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397 mRNA_3030: 11398 - Hypothetical Protein, at 137392 to 137958 11398

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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134,275 + 11396 mRNA_3028 0.80 -0.5
134,286 + 11396 mRNA_3028 0.81 -1.2
134,586 - 0.7
134,616 - 1.3
134,641 - 0.9
134,649 + 1.4
134,808 - -0.3
134,828 + 0.3
134,904 + -0.4
134,917 + 0.1
134,919 + -0.1
134,926 - -1.3
135,245 - 11397 mRNA_3029 0.15 0.9
135,392 + 11397 mRNA_3029 0.22 -0.4
135,514 + 11397 mRNA_3029 0.28 -0.3
135,671 + 11397 mRNA_3029 0.35 -0.2
135,821 + 11397 mRNA_3029 0.42 2.0
135,947 - 11397 mRNA_3029 0.48 -1.3
136,128 + 11397 mRNA_3029 0.56 0.4
136,530 - 11397 mRNA_3029 0.75 0.9
136,541 + 11397 mRNA_3029 0.75 0.9
136,674 + 11397 mRNA_3029 0.82 -0.4
136,697 + 11397 mRNA_3029 0.83 -0.1
136,822 + 11397 mRNA_3029 0.89 -1.8
136,965 - -0.6
136,983 - 0.9
137,111 + 0.5
137,122 + -1.3
137,123 + 0.1
137,123 - -0.2
137,135 - 0.7
137,142 + -0.7
137,146 + -0.3
137,147 + 1.9
137,279 - -0.6
137,298 - -0.8
137,304 + -2.2
137,325 - 0.9
137,420 - 0.2
137,429 + 0.3
137,467 - 11398 mRNA_3030 0.13 -0.6
137,521 - 11398 mRNA_3030 0.23 0.2
137,566 - 11398 mRNA_3030 0.31 0.3
137,864 - 11398 mRNA_3030 0.83 0.0
137,872 - 11398 mRNA_3030 0.85 0.7
137,882 - 11398 mRNA_3030 0.86 -1.0
137,918 + 0.5
138,012 - -0.2