Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3021

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3020: 11388 - Hypothetical Protein, at 114693 to 115018 11388 mRNA_3021: 11389 - K00697 otsA trehalose 6-phosphate synthase, at 115343 to 117642 11389 mRNA_3022: 11390 - K12394 AP1S1_2 AP-1 complex subunit sigma 1/2, at 117998 to 118989 11390

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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115,013 + -1.1
115,017 + -0.3
115,071 - -0.4
115,084 + 0.1
115,100 + -1.5
115,101 + 1.3
115,371 + 1.3
116,297 - 11389 mRNA_3021 0.41 0.3
116,827 - 11389 mRNA_3021 0.65 0.3
117,458 + 1.2
117,604 - 2.1
117,607 + 2.7
117,612 - 0.7
117,750 - 0.8
117,755 + 1.9
117,758 - 1.9
117,763 - 0.6
117,763 - 2.7
117,763 - -0.1
117,769 - 0.9
117,783 - 1.3
117,793 - 1.6
117,793 - 0.4
117,794 + 1.1
117,794 + -0.4
117,794 + 0.3
117,796 + 0.2
117,797 - 0.7
117,797 + 0.6
117,797 - 1.3
117,800 - 1.4
117,801 + 0.1
117,804 + -0.6
117,914 - 1.9
117,916 - 0.4
117,922 - -0.3
117,924 - 1.3
117,925 + -0.0
117,947 - -0.2
117,948 + 0.1
117,953 - 0.7
117,954 - 1.2
117,957 - 1.0
118,244 - 11390 mRNA_3022 0.25 2.8