Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3009

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60118 to 65560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65747 to 66498 11377 mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66880 to 69062 11378

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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64,977 + 11376 mRNA_3008 0.89 -0.8
65,134 + -0.7
65,145 + 1.2
65,154 - -1.7
65,160 + 0.0
65,185 + 0.9
65,286 - 1.1
65,300 - 1.5
65,314 + -0.1
65,329 - -1.4
65,408 + 2.5
65,414 - -0.6
65,457 - -0.5
65,466 - -0.7
65,570 + 0.0
65,591 + -2.0
65,595 + -0.8
65,601 + -0.6
65,620 + 2.4
65,727 - -1.5
65,758 + 0.4
65,912 - 11377 mRNA_3009 0.22 -1.4
65,913 + 11377 mRNA_3009 0.22 -1.2
65,914 + 11377 mRNA_3009 0.22 -0.9
65,918 + 11377 mRNA_3009 0.23 -1.8
65,939 - 11377 mRNA_3009 0.26 -0.7
65,941 + 11377 mRNA_3009 0.26 -0.2
66,007 + 11377 mRNA_3009 0.35 -0.5
66,015 - 11377 mRNA_3009 0.36 2.0
66,018 + 11377 mRNA_3009 0.36 0.7
66,033 + 11377 mRNA_3009 0.38 0.7
66,052 - 11377 mRNA_3009 0.41 0.6
66,073 - 11377 mRNA_3009 0.43 0.4
66,077 - 11377 mRNA_3009 0.44 2.8
66,335 - 11377 mRNA_3009 0.78 0.9
66,651 - 2.2
66,782 - -1.3
66,813 + 0.1
66,820 + 0.8
66,821 - 1.8
66,825 - 1.5
66,829 - 1.5
66,834 + 0.7
66,834 - 0.9
66,834 - -0.2
66,835 + -0.3
66,839 - 0.6
66,840 + 2.1
66,841 + -1.3
66,843 + -0.0
66,851 + 1.0
66,852 - 0.8
66,852 - 0.1
66,977 + -0.2
66,981 + -0.2
66,983 + 0.6
66,992 - 2.2
66,993 + 0.2
67,169 + 11378 mRNA_3010 0.13 -0.1
67,171 - 11378 mRNA_3010 0.13 0.9
67,172 - 11378 mRNA_3010 0.13 1.3
67,427 + 11378 mRNA_3010 0.25 1.2
67,431 + 11378 mRNA_3010 0.25 -1.7