Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3008

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57781 to 59867 11375 mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60118 to 65560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65747 to 66498 11377

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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60,035 + -0.8
60,203 + 0.5
60,230 + 1.5
60,334 - -0.6
60,402 - 0.3
60,806 - 11376 mRNA_3008 0.13 1.6
60,810 + 11376 mRNA_3008 0.13 0.1
60,859 - 11376 mRNA_3008 0.14 -0.2
61,216 - 11376 mRNA_3008 0.20 0.8
61,250 - 11376 mRNA_3008 0.21 1.1
61,377 - 11376 mRNA_3008 0.23 -0.5
61,399 + 11376 mRNA_3008 0.24 -1.8
61,646 + 11376 mRNA_3008 0.28 -0.6
61,910 + 11376 mRNA_3008 0.33 1.2
62,411 - 11376 mRNA_3008 0.42 -0.3
62,673 + 11376 mRNA_3008 0.47 0.2
62,674 - 11376 mRNA_3008 0.47 0.1
62,682 + 11376 mRNA_3008 0.47 -0.7
62,728 + 11376 mRNA_3008 0.48 1.2
62,730 - 11376 mRNA_3008 0.48 -0.4
62,955 - 11376 mRNA_3008 0.52 1.1
63,159 + 11376 mRNA_3008 0.56 -0.1
63,812 - 11376 mRNA_3008 0.68 -0.5
63,848 - 11376 mRNA_3008 0.69 0.8
63,980 + 11376 mRNA_3008 0.71 -1.5
63,988 - 11376 mRNA_3008 0.71 -0.0
64,145 - 11376 mRNA_3008 0.74 -0.5
64,169 - 11376 mRNA_3008 0.74 0.1
64,275 + 11376 mRNA_3008 0.76 0.2
64,407 - 11376 mRNA_3008 0.79 -2.2
64,626 + 11376 mRNA_3008 0.83 -1.7
64,737 - 11376 mRNA_3008 0.85 -0.6
64,742 - 11376 mRNA_3008 0.85 -0.6
64,977 + 11376 mRNA_3008 0.89 -0.8
65,134 + -0.7
65,145 + 1.2
65,154 - -1.7
65,160 + 0.0
65,185 + 0.9
65,286 - 1.1
65,300 - 1.5
65,314 + -0.1
65,329 - -1.4
65,408 + 2.5
65,414 - -0.6
65,457 - -0.5
65,466 - -0.7
65,570 + 0.0
65,591 + -2.0
65,595 + -0.8
65,601 + -0.6
65,620 + 2.4
65,727 - -1.5
65,758 + 0.4
65,912 - 11377 mRNA_3009 0.22 -1.4
65,913 + 11377 mRNA_3009 0.22 -1.2
65,914 + 11377 mRNA_3009 0.22 -0.9
65,918 + 11377 mRNA_3009 0.23 -1.8
65,939 - 11377 mRNA_3009 0.26 -0.7
65,941 + 11377 mRNA_3009 0.26 -0.2
66,007 + 11377 mRNA_3009 0.35 -0.5
66,015 - 11377 mRNA_3009 0.36 2.0
66,018 + 11377 mRNA_3009 0.36 0.7
66,033 + 11377 mRNA_3009 0.38 0.7
66,052 - 11377 mRNA_3009 0.41 0.6
66,073 - 11377 mRNA_3009 0.43 0.4
66,077 - 11377 mRNA_3009 0.44 2.8
66,335 - 11377 mRNA_3009 0.78 0.9