Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3006

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54754 to 56074 11373 mRNA_3006: 11374 - K03259 EIF4E translation initiation factor 4E, at 56733 to 57511 11374 mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57781 to 59867 11375

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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55,962 + -2.0
55,991 + -1.8
56,184 - 1.0
56,241 + 0.9
56,532 + 0.7
56,572 + 0.5
56,723 - -0.7
56,876 + 11374 mRNA_3006 0.18 -0.4
56,979 + 11374 mRNA_3006 0.32 -0.4
57,117 - 11374 mRNA_3006 0.49 0.3
57,261 + 11374 mRNA_3006 0.68 0.9
57,408 - 11374 mRNA_3006 0.87 0.6
57,414 + 11374 mRNA_3006 0.87 -0.3
57,416 - 11374 mRNA_3006 0.88 -0.4
57,551 + 0.1
57,591 - -1.9
57,699 - 1.1
57,718 - -0.1
57,721 + -0.1
57,763 - -0.2
57,848 + -0.7