Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2974

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688176 to 690178 11341 mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690635 to 692698 11342 mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693422 to 694637 11343

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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689,656 + 11341 mRNA_2973 0.74 -0.0
689,670 + 11341 mRNA_2973 0.75 0.8
689,775 - 11341 mRNA_2973 0.80 0.3
689,782 + 11341 mRNA_2973 0.80 -0.1
689,912 - 11341 mRNA_2973 0.87 1.3
689,932 + 11341 mRNA_2973 0.88 0.0
690,059 + -0.7
690,061 + 0.4
690,090 + -1.9
690,247 - -1.8
690,352 - -1.0
690,410 - -0.3
690,525 + -3.0
690,658 + 0.9
690,806 - 1.2
690,806 - -0.5
690,822 + -1.5
690,842 + 11342 mRNA_2974 0.10 0.2
690,975 + 11342 mRNA_2974 0.16 2.2
690,978 - 11342 mRNA_2974 0.17 -0.3
690,996 + 11342 mRNA_2974 0.17 0.1
691,269 + 11342 mRNA_2974 0.31 -0.2
691,374 - 11342 mRNA_2974 0.36 -1.4
691,520 + 11342 mRNA_2974 0.43 -0.1
691,651 + 11342 mRNA_2974 0.49 -0.1
691,691 - 11342 mRNA_2974 0.51 1.5
691,730 - 11342 mRNA_2974 0.53 1.8
691,947 - 11342 mRNA_2974 0.64 -0.5
692,010 - 11342 mRNA_2974 0.67 -0.8
692,072 - 11342 mRNA_2974 0.70 0.4
692,139 + 11342 mRNA_2974 0.73 0.5
692,552 + -0.5
692,830 + -0.2
692,836 + -0.5
692,841 + 0.0
692,850 + 0.2
692,866 - 1.4
692,867 - -0.3
692,919 + 1.5
692,928 + -1.2
692,929 + -0.7
692,929 - 0.5
692,932 + 0.9
692,935 - -0.1
692,937 - -0.9
692,938 + 0.8
692,941 + 1.4
692,942 + 0.9
692,944 + 0.4
692,944 + 3.0
692,948 - 1.4
692,948 + 0.3
692,951 + 2.1
692,952 + 0.5
692,954 + 1.7
692,957 + -0.4
692,964 - 1.2
692,969 - 1.0
692,983 + 0.1
692,999 - -0.8
693,000 + -1.0
693,002 - 0.2
693,006 + 0.5
693,007 + 0.5
693,173 + 0.6
693,191 - -0.1
693,294 - 0.5
693,454 - 0.4
693,479 + 1.5
693,482 + -0.2
693,631 + 11343 mRNA_2975 0.17 -1.0
693,640 + 11343 mRNA_2975 0.18 1.0
693,647 - 11343 mRNA_2975 0.19 -0.8
693,654 - 11343 mRNA_2975 0.19 -0.3
693,655 + 11343 mRNA_2975 0.19 -0.6
693,682 + 11343 mRNA_2975 0.21 -0.2