Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2962

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654993 to 657914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658359 to 659860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660416 to 662957 11331

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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657,402 - 11329 mRNA_2961 0.82 -1.0
657,470 - 11329 mRNA_2961 0.85 -2.1
657,599 + 11329 mRNA_2961 0.89 -1.7
657,740 - -1.4
657,876 + -0.1
657,889 + -0.8
657,890 + -1.6
658,044 + -0.5
658,120 + -0.3
658,129 - -0.5
658,174 - 0.4
658,175 + 0.7
658,193 - 0.4
658,294 + -1.4
658,297 - 1.1
658,344 - -0.3
658,506 - -0.1
658,513 - 11330 mRNA_2962 0.10 -0.3
658,587 - 11330 mRNA_2962 0.15 -0.7
658,595 + 11330 mRNA_2962 0.16 -0.9
658,645 + 11330 mRNA_2962 0.19 -0.1
658,791 - 11330 mRNA_2962 0.29 -1.2
658,886 + 11330 mRNA_2962 0.35 -0.3
658,940 - 11330 mRNA_2962 0.39 -0.3
659,072 - 11330 mRNA_2962 0.47 -0.6
659,084 - 11330 mRNA_2962 0.48 -0.3
659,206 - 11330 mRNA_2962 0.56 0.2
659,958 + 0.6
660,064 + -1.0
660,068 - 1.3
660,102 - 1.5
660,210 - -0.2