Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2871

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409148 to 410896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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410,368 - 11238 mRNA_2870 0.70 1.5
410,524 + 11238 mRNA_2870 0.79 0.6
410,689 + 11238 mRNA_2870 0.88 1.0
410,840 + -0.3
410,920 + -0.9
410,963 + 1.8
410,968 - 0.0
410,971 + -0.3
410,972 - 0.2
410,974 - -0.8
410,974 - -0.7
410,975 + -1.3
411,007 - 2.0
411,007 - -0.3
411,008 - -0.8
411,012 + 0.6
411,015 + -0.2
411,023 + 1.5
411,024 + -1.1
411,025 + -0.6
411,034 + -0.0
411,034 + -0.6
411,035 + 0.3
411,035 + 1.6
411,036 + 0.7
411,039 + 0.7
411,070 + 1.6
411,083 + -0.5
411,083 - -0.2
411,084 + -0.5
411,085 - 0.7
411,087 + -0.9
411,100 - 1.2
411,105 + 1.4
411,108 + -1.4
411,111 + -0.0
411,114 + 0.3
411,117 + 3.1
411,228 + 0.7
411,231 + 0.8
411,234 - 0.8
411,248 + 1.7
411,506 - 11239 mRNA_2871 0.25 1.3
411,531 + 11239 mRNA_2871 0.28 0.1
411,660 - 11239 mRNA_2871 0.44 0.2
411,687 + 11239 mRNA_2871 0.47 -0.5
411,692 - 11239 mRNA_2871 0.48 -1.1
411,692 - 11239 mRNA_2871 0.48 -0.1
411,695 + 11239 mRNA_2871 0.48 0.2
411,841 - 11239 mRNA_2871 0.66 -0.6
411,938 - 11239 mRNA_2871 0.79 -2.8
411,944 - 11239 mRNA_2871 0.79 -0.0
412,077 + -0.4
412,102 - 2.5
412,123 + 0.0
412,239 - -0.2
412,278 - 1.6
412,281 + -0.2
412,285 + -3.4
412,287 - 1.1
412,288 - -1.0
412,288 - 0.6
412,293 + 0.1
412,294 + 1.1
412,301 - 1.3
412,303 - -0.9
412,309 + -0.2
412,317 - -0.0
412,318 - -0.1
412,368 - 1.0
412,615 + -0.0
412,769 - 11240 mRNA_2872 0.18 0.1
412,914 - 11240 mRNA_2872 0.28 1.0
413,045 + 11240 mRNA_2872 0.36 0.3
413,090 + 11240 mRNA_2872 0.39 0.1