Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2857

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2856: 11224 - K14288 XPOT exportin-T, at 377812 to 382012 11224 mRNA_2857: 11225 - K11247 SH3GL endophilin-A, at 382503 to 383665 11225 mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383912 to 385065 11226

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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382,130 + -0.3
382,260 + 0.9
382,396 - -1.1
382,403 + -0.2
382,417 - -1.1
382,548 - 1.0
382,551 - 2.7
382,565 + 1.4
382,838 + 11225 mRNA_2857 0.29 -2.5
382,989 + 11225 mRNA_2857 0.42 0.5
383,066 + 11225 mRNA_2857 0.48 -1.3
383,095 + 11225 mRNA_2857 0.51 0.9
383,264 - 11225 mRNA_2857 0.65 0.2
383,318 + 11225 mRNA_2857 0.70 1.8
383,734 - 2.5
383,741 + 0.6
383,862 + 0.7
383,885 + -0.6
383,890 + 1.3
384,022 - -1.0
384,022 - -0.7
384,160 - 11226 mRNA_2858 0.21 1.5
384,278 - 11226 mRNA_2858 0.32 -0.5
384,290 - 11226 mRNA_2858 0.33 0.2
384,324 + 11226 mRNA_2858 0.36 -0.3
384,599 - 11226 mRNA_2858 0.60 -0.1