Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2830

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2829: 11197 - Hypothetical Protein, at 313817 to 315093 11197 mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315328 to 317739 11198 mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318054 to 319183 11199

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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314,330 + 11197 mRNA_2829 0.40 -0.2
314,438 - 11197 mRNA_2829 0.49 0.8
314,458 - 11197 mRNA_2829 0.50 1.3
314,618 - 11197 mRNA_2829 0.63 -0.9
314,618 + 11197 mRNA_2829 0.63 1.3
314,741 - 11197 mRNA_2829 0.72 -0.4
315,031 - -2.1
315,053 + -0.0
315,069 + 0.8
315,618 + 11198 mRNA_2830 0.12 -1.6
315,749 + 11198 mRNA_2830 0.17 -0.5
316,254 + 11198 mRNA_2830 0.38 -1.0
316,450 - 11198 mRNA_2830 0.47 1.9
316,490 + 11198 mRNA_2830 0.48 -0.5
316,576 - 11198 mRNA_2830 0.52 0.1
316,623 + 11198 mRNA_2830 0.54 -0.1
316,647 + 11198 mRNA_2830 0.55 2.4
316,833 + 11198 mRNA_2830 0.62 0.3
316,885 + 11198 mRNA_2830 0.65 0.8
317,213 - 11198 mRNA_2830 0.78 1.4
317,493 + 11198 mRNA_2830 0.90 0.6
317,635 + -0.4
318,085 + 0.0
318,275 + 11199 mRNA_2831 0.20 1.6
318,672 + 11199 mRNA_2831 0.55 -0.3