Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2779

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188984 to 191295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191425 to 193018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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190,735 + 11146 mRNA_2778 0.76 1.1
190,941 - 11146 mRNA_2778 0.85 0.6
190,942 + 11146 mRNA_2778 0.85 0.3
190,964 - 11146 mRNA_2778 0.86 2.8
190,970 + 11146 mRNA_2778 0.86 -0.3
191,153 - 0.2
191,153 + -0.8
191,161 + -0.3
191,319 + 0.0
191,320 - 1.3
191,348 - 0.4
191,430 - -1.1
191,441 - 0.1
191,552 + -1.7
191,580 - -0.8
191,763 + 11147 mRNA_2779 0.21 1.1
191,794 + 11147 mRNA_2779 0.23 0.5
192,023 - 11147 mRNA_2779 0.38 0.6
192,129 + 11147 mRNA_2779 0.44 -0.7
192,420 + 11147 mRNA_2779 0.62 -0.5
192,733 - 11147 mRNA_2779 0.82 -1.1
192,852 - 11147 mRNA_2779 0.90 0.6
192,990 + -1.2
192,990 + -1.2
192,995 - 0.6
193,008 + 0.8
193,018 - 1.7
193,021 + 0.6
193,052 + -1.5
193,120 + -0.1
193,253 + 0.9
193,285 - 0.1
193,308 + -1.9
193,309 - -0.2
193,310 - -0.2
193,318 + -0.6
193,321 - 0.0
193,330 + 0.5
193,383 - -2.2
193,384 + 0.1
193,391 + 1.2
193,397 - 0.6
193,397 - -0.4
193,404 + -1.1
193,414 - 0.2
193,435 - 0.8
193,462 - 1.0
193,478 - -0.2
193,480 - 0.2
193,489 - -1.2
193,522 - 0.2
193,529 + 0.0
193,543 + 0.0
193,563 + -0.0
193,573 - -0.3
193,578 + 0.9
193,578 + -1.9
193,582 + -0.4
193,600 + 0.3
193,615 - -3.2
193,621 + 0.4
193,622 + -1.2
193,623 + 0.0
193,703 + -0.4
193,745 + -0.7
193,749 + -0.0
193,875 - -0.1
193,900 + 0.4