Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2744

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119009 to 120330 11111 mRNA_2744: 11112 - K20798 HENMT1 small RNA 2'-O-methyltransferase, at 120762 to 122799 11112 mRNA_2745: 11113 - HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785, at 123749 to 127463 11113

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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119,788 - 11111 mRNA_2743 0.59 0.2
119,796 - 11111 mRNA_2743 0.60 -3.6
119,796 + 11111 mRNA_2743 0.60 -0.4
119,940 - 11111 mRNA_2743 0.70 -0.5
120,072 - 11111 mRNA_2743 0.80 2.1
120,088 - 11111 mRNA_2743 0.82 0.2
120,097 + 11111 mRNA_2743 0.82 0.3
120,099 + 11111 mRNA_2743 0.82 -0.4
120,105 + 11111 mRNA_2743 0.83 -0.6
120,246 - -0.4
120,249 + 0.3
120,251 + -0.3
120,516 - -0.3
120,561 + -1.3
120,570 - 1.6
120,700 - -0.7
120,701 + -0.6
120,734 + 2.4
120,827 - -0.6
120,841 - -0.1
120,853 + -0.4
120,860 - -1.0
121,129 - 11112 mRNA_2744 0.18 -0.5
121,397 + 11112 mRNA_2744 0.31 -0.1
121,671 + 11112 mRNA_2744 0.45 0.1
121,719 - 11112 mRNA_2744 0.47 -0.5
122,154 + 11112 mRNA_2744 0.68 -1.7
122,409 + 11112 mRNA_2744 0.81 -0.3
122,575 + 11112 mRNA_2744 0.89 -0.1
122,576 - 11112 mRNA_2744 0.89 -0.7
122,605 + 1.6
122,753 + -0.4
122,878 - -0.4
122,988 - 1.2
122,995 + 2.3
122,996 - -0.2
123,012 + 0.4
123,013 + -0.4
123,033 + -0.8
123,038 - 0.9
123,041 + 1.0
123,051 - -1.4
123,059 - 0.4
123,060 + -1.1
123,069 + -0.4
123,069 + -1.1
123,071 - 0.8
123,073 + -0.3
123,082 + -0.1
123,105 + 0.6
123,112 - 0.1
123,122 + -0.4
123,151 + 0.6
123,166 + 1.3
123,173 - -0.6
123,173 - -1.1
123,178 + 1.9
123,188 - 1.6
123,202 + 1.7
123,210 + -0.7
123,315 - -0.2
123,394 + -0.6
123,422 - -0.1
123,442 - 0.2
123,474 + -0.7
123,487 - 0.8
123,499 + -0.7
123,502 + -0.3
123,517 + 1.4
123,518 - 0.6
123,547 + -0.9
123,548 - 0.1
123,562 + -3.3
123,573 + -0.5
123,590 - 1.2
123,605 - -0.4
123,608 - -0.0
123,672 + 0.1
123,690 + -0.5
123,725 + -0.4
123,749 + 0.1
123,750 - 1.0