Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2616

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2615: 10983 - K14775 UTP30, RSL1D1 ribosome biogenesis protein UTP30, at 602494 to 603879 10983 mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604328 to 604979 10984 mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605466 to 606411 10985

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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603,935 + 1.6
603,941 + -0.7
603,944 + 2.3
603,991 + 0.1
604,007 + 0.5
604,112 - 0.2
604,128 + 1.5
604,271 + -2.5
604,542 - 10984 mRNA_2616 0.33 0.0
604,663 - 10984 mRNA_2616 0.51 1.7
604,703 - 10984 mRNA_2616 0.58 0.2
604,716 + 10984 mRNA_2616 0.60 0.8
604,891 + 10984 mRNA_2616 0.86 -0.2
604,960 + 0.2
604,984 - -0.1
605,013 - 0.5
605,027 - -0.1
605,029 + -2.1
605,030 - -0.8
605,153 - 0.1
605,163 - -1.1
605,166 + -1.5
605,169 - 0.3
605,177 - -0.4
605,182 + 0.6
605,183 + -0.5
605,213 + -1.3
605,314 + -0.1
605,314 + 1.3
605,317 + -0.2
605,750 + 10985 mRNA_2617 0.30 0.5
605,920 - 10985 mRNA_2617 0.48 -0.9