Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2612

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591297 to 591714 10979 mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591842 to 594740 10980 mRNA_2613: 10981 - K00223 ERG4 Delta24(24(1))-sterol reductase, at 594980 to 596945 10981

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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590,845 - -0.2
590,848 + 0.2
590,861 + -0.5
590,869 + 2.0
590,888 - -0.5
591,000 + 1.1
591,002 + 0.8
591,134 + -0.1
591,150 - 0.3
591,345 - 10979 mRNA_2611 0.11 -0.5
591,453 + 10979 mRNA_2611 0.37 0.2
592,171 + 10980 mRNA_2612 0.11 0.1
592,304 - 10980 mRNA_2612 0.16 -0.3
592,306 + 10980 mRNA_2612 0.16 0.3
592,327 - 10980 mRNA_2612 0.17 0.6
592,328 + 10980 mRNA_2612 0.17 0.5
592,934 - 10980 mRNA_2612 0.38 0.1
593,067 + 10980 mRNA_2612 0.42 -1.5
593,350 - 10980 mRNA_2612 0.52 -1.0
593,395 - 10980 mRNA_2612 0.54 -0.0
593,962 - 10980 mRNA_2612 0.73 1.2
594,349 - 10980 mRNA_2612 0.86 -0.0
594,359 + 10980 mRNA_2612 0.87 -0.2
594,373 + 10980 mRNA_2612 0.87 1.5
594,385 - 10980 mRNA_2612 0.88 1.5
594,538 - -0.1
594,644 - 0.6
594,800 + 0.1
594,806 + -2.0
594,812 - -1.1
594,957 - -0.1
594,968 + -0.3
594,972 - 1.8
595,260 + 10981 mRNA_2613 0.14 -1.4