Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2583

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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494,201 + 10949 mRNA_2581 0.85 -1.7
494,232 + 10949 mRNA_2581 0.87 -0.0
494,321 - 0.3
494,326 - -0.6
494,479 - -1.6
494,633 + 10950 mRNA_2582 0.26 -0.2
494,638 - 10950 mRNA_2582 0.27 -0.8
494,651 - 10950 mRNA_2582 0.29 -1.0
494,654 + 10950 mRNA_2582 0.29 0.1
494,675 - 10950 mRNA_2582 0.33 -1.3
494,680 + 10950 mRNA_2582 0.33 -0.5
494,765 - 10950 mRNA_2582 0.47 -0.4
494,769 - 10950 mRNA_2582 0.48 -0.8
494,887 - 10950 mRNA_2582 0.66 -1.2
494,926 + 10950 mRNA_2582 0.73 -0.4
494,937 + 10950 mRNA_2582 0.74 -1.2
494,952 - 10950 mRNA_2582 0.77 -0.3
495,085 + -1.3
495,119 - -0.7
495,263 + -1.1
495,401 + -0.7
495,972 - 10951 mRNA_2583 0.18 -2.1
496,188 + 10951 mRNA_2583 0.23 -0.8
496,345 - 10951 mRNA_2583 0.27 -0.5
496,363 - 10951 mRNA_2583 0.28 -1.4
496,372 - 10951 mRNA_2583 0.28 -1.2
496,401 + 10951 mRNA_2583 0.29 -0.5
496,778 + 10951 mRNA_2583 0.38 0.0
496,901 + 10951 mRNA_2583 0.40 0.1
496,925 + 10951 mRNA_2583 0.41 -2.6
496,951 + 10951 mRNA_2583 0.42 -0.6
497,102 + 10951 mRNA_2583 0.45 2.9
497,136 + 10951 mRNA_2583 0.46 -1.0
497,613 - 10951 mRNA_2583 0.57 -1.8
497,676 - 10951 mRNA_2583 0.59 -1.6
497,843 - 10951 mRNA_2583 0.63 -0.4
497,878 + 10951 mRNA_2583 0.64 0.3
497,994 - 10951 mRNA_2583 0.66 1.6
498,017 + 10951 mRNA_2583 0.67 -0.0
498,536 - 10951 mRNA_2583 0.79 1.3
498,861 - 10951 mRNA_2583 0.87 -0.5
498,918 + 10951 mRNA_2583 0.88 1.3
499,013 + -0.3
499,320 + -1.6
499,323 - -0.4
499,471 + -0.5
499,479 - 0.7
499,635 - 0.7
499,639 + -0.3
499,751 - 1.6
499,757 - 1.0
499,760 - 0.7
499,773 - 1.5
499,778 + 1.0
499,778 + 0.2
499,885 - 1.0
499,942 - 10952 mRNA_2584 0.10 -0.3
500,074 + 10952 mRNA_2584 0.15 0.7
500,203 - 10952 mRNA_2584 0.19 0.9
500,212 - 10952 mRNA_2584 0.20 1.4
500,227 + 10952 mRNA_2584 0.20 -0.2
500,252 + 10952 mRNA_2584 0.21 0.5
500,322 + 10952 mRNA_2584 0.23 -0.8
500,329 - 10952 mRNA_2584 0.24 -0.3
500,384 + 10952 mRNA_2584 0.25 0.5
500,397 - 10952 mRNA_2584 0.26 1.2
500,402 - 10952 mRNA_2584 0.26 -0.1